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11-1325-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 809042 [Map]; Strand: c
      • AT4G01860.2 - [+] show detail - Transducin family protein / WD-40 repeat family protein
        Distance: -982; Region: promoter
      • AT4G01860.1 - [+] show detail - Transducin family protein / WD-40 repeat family protein
        Distance: -982; Region: promoter
      • AT4G01865.1 - [+] show detail - pre-tRNA
        Distance: -700; Region: promoter
      • AT4G01870.1 - [+] show detail - tolB protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1325-1 - 5-prime edge 
    CTCTAGAGAA CACTGGGAAT AACGCTTTTC CGTCTTGCTC ACCCGACGGT 
    AAATCAATCG TGTTCCGATC TGGTAGATCA GGTCATAAGA ATCTCTACAT 
    TGTAGACGCC GTTAACNGGA GAATCTAACN GGCGGTGGAA TACGACGGTT 
    AACGGATGGA CCATGGATTG ACACTATGCC TTGCTGGTCT CCGAAAGGAG 
    ATCTCATCGG ATTCTCATCT AATCGTCATA ATCCAGAGAA CACGGCCGTG 
    TTCGGTGCTT ACGTGGTGAG ACCTGACGGT ACTGGTTTGA GGAGGATTCA 
    AATTTCGGGA CCGGAAGGGT CGGAGGAAGC GGCGAGGGAG AGAGTTAATC 
    ATGTGAGTTT CAATAAAGAT GGTGATTGGC TTGTTTTCGC GGCGAATTTG 
    AGCGGAGTAA CGGCGGAGCC GGTGACGATG CCGAATCAGT TTCAGCCTTA 
    TGGGGATTTG TACGTTGTGA AATTAGACGG AACGGGATTG AGGAGGCTGA 
    CGTGGAATGG GTATGAAGAT GGGACTCCTA CGTGGCATAC TGCTGATGAA 
    TTGGATTTGA GTCANTTGAA TTTGAACGGN CAANATGGTG ACAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 809158 [Map]; Strand: c
      • AT4G01865.1 - [+] show detail - pre-tRNA
        Distance: -816; Region: promoter
      • AT4G01870.1 - [+] show detail - tolB protein-related
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1325-1 - 3-prime edge 
    CTCTAGAGTG AGAATCTTCA CATCACAAGG AAGCTCTTCT TTATCAGCGG 
    TGAGATCTGA TGGATCGAAC TTGATTCGAG CTATCTGAAC CGCGATTCTC 
    GCCGGAGAGA AGATTGGACC TAGAGATGTG TAGATTACAT GACGCTCTGT 
    TGGACTCCAT GAATTGTAGA AAGCTGTACG GTCTTTGATC AACGTCCATC 
    GTTTTGAACC GTCGGATTTA GATACTTTGA TTCCACCGTT GATGTCGAAA 
    TCGGAGTTCA ATGCGATTAG ATCACCGTTG GGAGATGATG ATGGAAACGA 
    TCCGTTGATT CTTAGTAATC GGAGGGTTTT GATTGGTGAA ACGATGGATT 
    CGATGTTAGG TACGATTGAC TCGCCTTGAG TTGACTCGCC TCTGAATCGG 
    TGGTAGCCGA GGAACTCGGA GTCTGGAGAC ACGAAAGGGT TGTAATGGTG 
    GAAACTCGGA TTGAGTGACT CAGTCACCGG CTGAAACGTT TTGTTTTCAA 
    GGTCGTAAAT CTCGATGTGA CGGTGGTTGA CGCCGCGACG GCGAGTTGCT 
    AAGGCGATTC GTTTCCCGTC GCGGAAAGCT GCAGGAGTGA AGCAATGGAG 
    TCCAGATGGA GTGACTCGGA TTGGTGTGAT TGGGAAATCG GTATATTCCG 
    TGAAATTCTC CGGTNTATCT ACCCNGAAGA TGCTCCACCA ACCGTCGTCT 
    GCTTGGTGGT GGAA

AT4G01860.1

Model type
Protein coding
Short Description
Transducin family protein / WD-40 repeat family protein
Computational Description
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 18202 Blast hits to 10734 proteins in 529 species: Archae - 38; Bacteria - 4707; Metazoa - 5622; Fungi - 3824; Plants - 1793; Viruses - 0; Other Eukaryotes - 2218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01860.2

Model type
Protein coding
Short Description
Transducin family protein / WD-40 repeat family protein
Computational Description
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01865.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Phe (anticodon: GAA)
Link
InterPro Scan - TAIR

AT4G01870.1

Model type
Protein coding
Short Description
tolB protein-related
Computational Description
tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 6090 Blast hits to 4220 proteins in 1098 species: Archae - 42; Bacteria - 3414; Metazoa - 20; Fungi - 42; Plants - 120; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink).
Link
InterPro Scan - TAIR