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11-1336-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 351201 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 1022; Region: intergenic
      • AT2G01818.1 - [+] show detail - PLATZ transcription factor family protein
        Distance: 2256; Region: intergenic
    Flanking Genome Sequence: 11-1336-1 - 5-prime edge
    NNAANAATGA TGGTCATAAT GTTTTGGCAG CAAAATCCAC TTTAGAAAAT 
    TAGAATATCA AATAGAAGTA AAAGTAATGC AGGAAAAAAA AACTATTAAT
    TGGGTATGAT TATGGCAGAC AAAAAGTTAA NAATAAAANA GGAATGCCTG
    NGAGCCAATT GGAGGATATA TNTCACANAT TTAACTGAGG GNGACGAGAG
    AATAATAATA ATGCGTGNGC TTTTCAATCT CAATGTTATG CATGTTCCAC
    ATGCCNTGTN TAANAANATC TNTNTTCTTT GACNAANAAA AAACTTCAAA
    TCTTCCAATG TTTTTTTTNT NTTANNANNN AAGGCCNNNG NCCACCNNCG
    NCCCNCNCNG CNNGNNNNNA TNNGGGAGNN NANNNNNCNC CCCCCCCCNN
    CCGCCCNNNN NNNAGGGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 351317 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 1138; Region: intergenic
      • AT2G01818.1 - [+] show detail - PLATZ transcription factor family protein
        Distance: 2140; Region: intergenic
    Flanking Genome Sequence: 11-1336-1 - 3-prime edge
    ATTCTTCTTT ATCTATTATT GATTTTTTTT GGCTTGATAA TGCGACTCAA 
    TAATTATCAA GAACAGTGAT CCAGCCATAA GACGAGGATG CTATATGATT
    AAAGATTTTT TTTTTNGTNG TNGAGTNGGT TTNAAANATN ATTANGGTNT
    NGTTTGGGTT TNGTTAAATT CCNTTTTNGT NCAAAACAAA AATCCCCNAC
    AANGGTCTNN GGCCCCAANA ACCCCNCCNT GTNGNCTAGN GACCCCCAGG
    GGGCCAANAT TAATTTTNCT NGTTTNCNAA AAGGTTTNAT TCTTTNTANC
    TANCCCANTT AAAAAATTTT CTCNTCAAAA TNTNTTNAAA NAAAAATTTN
    TGTTTTNCNT AATNTTAAAA NCANGTTTTT GTNCNCTTTT TNTTAAAGTT
    TNCACCTAGG GGCGGNCTTT CGGGTAACCG GGTNGNNTNC GGGTAAAANC
    CNANCGGGTC CAANTTTTTN GGGTAAAAAA NTTTAAAATC TANTAAAANA
    AATNTAAAAT TTCGGTTNGG TTNCGGTNCG GATTTATTCG GNTCCAANNC
    GGTTNGGATT TAAATTTTNG GGCCTAATNG AAACCANCCC CCANTTTTTG
    GTNAAAANCC CCNATTTTCA GGGAAANNCC CNGNTTTTTN GGGAAANTTC
    GGGGTTGGGG GAAANTTAAA NTTTNGGGTT TTTTNGNNTT CCGGNCNGGN
    TGGGTC

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01818.1

Model type
Protein coding
Short Description
PLATZ transcription factor family protein
Computational Description
PLATZ transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT3G60670.1); Has 397 Blast hits to 397 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 397; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR