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11-1339-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17337206 [Map]; Strand: w
      • AT2G41560.1 - [+] show detail - autoinhibited Ca(2+)-ATPase, isoform 4
        Distance: 0; Region: exon1 (5UTR)
      • AT2G41570.1 - [+] show detail - transposable element gene
        Distance: -531; Region: promoter
    Flanking Genome Sequence: 11-1339-1 - 3-prime edge 
    TCTCTCTCTC TCTCAGCTGC CTTCGCGCCG GCGAAGTTTG TCTCTGTGAA 
    AACAGAGAGT GGTAGTGAGA GTGTGAGAAA TGTCGAACTT GCTAAGGGAT 
    TTCGAGGTGG AGGCTAAGAA TCCGTCGCTG GAAGCGCGTC AAAGATGGAG 
    GTCGTCCGTG TCTATCGTTA AGAACCGTAC TCGTCGTTTC CGTAACATTC 
    GGGATCTCGA TAAGCTCGCT GACTACGAGA ACAAGAAGCA CCAGATCCAG 
    GTTCCTATTT CTTTGGTTTC TCTATCTCTA TTATTCAGTT TTTTTTTTTN 
    GNNGGNANNN NAATTTNNAT TTTNTGGGTA AAANGGNTTT NNAAAAAATT 
    TTTCNTNGGG ATCCTNAAAA GTNAAANCCT TTTAAAAAAN NAATTNANAN 
    NGGNNNCCCC TNTNAANNTN CCANCCNGGG CCGNAANCCN CCCNNNCCCT 
    TTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17337322 [Map]; Strand: w
      • AT2G41560.1 - [+] show detail - autoinhibited Ca(2+)-ATPase, isoform 4
        Distance: -53; Region: promoter
      • AT2G41570.1 - [+] show detail - transposable element gene
        Distance: -415; Region: promoter
    Flanking Genome Sequence: 11-1339-1 - 5-prime edge 
    GAGAGAGAGA GGATTGAGCA ACGGATTGGT GTGAGAGTTG CTTTTTATGG 
    ATTACCCAAA CCCGACCCGA ATTACTCGGA TTTTATGCTC GGATAGGGCC 
    CATTCATTCA AATTTCATTT TCGTCTCATT CGGATAATTA GTAGGCAACC 
    AAATCAAATG ATCCGACCCA GACGAATATT ATTAGGTCCA TAAACATGCT 
    CTTTTTTTTT TTNCCNTNGG GGNNNNCTTT NGGGNTTTTN AANNAAAANC 
    CCNAAAAANN NNGNNTTTTT TTNNNGNTTC CCNNNNNNGN TTNNGCCCNN 
    NANCCCTTTT NTTTTCCNCN NAANNCNNNT TTTTTTTTTC CAAAAAAATT 
    TTNNNAANAA AANNTTTTTT TANGGNAAAA NNNANCTTNN TTNANCCCNG 
    GGNCCCCAAA NTTTNGGNCC NNNNNNTTNN CCNTTTTTTN NGTCNAAAAN 
    TTTTTTTTNT GGGNTTTTCC CNTTTTTNAA CCCNTTCGGN AAAAAAANAA 
    AAAAATTTTT NGGGGGNGNT TNNGTTTCNN AAAAAAAAAN CNNAAAANNG 
    GGGGGGTTTN NAAANNNNNA NNTCCCCCCC NTTTTNNGGG AAAANATNTT 
    GNAAAAAAAA AAAANAAAAA AANNNTTNNN NNNGGGNGGN NNNNCCCNCN 
    CNNNNAAA

AT2G41560.1

Model type
Protein coding
Short Description
autoinhibited Ca(2+)-ATPase, isoform 4
Curator Summary
encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.
Computational Description
"autoinhibited Ca(2+)-ATPase, isoform 4" (ACA4); FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: autoinhibited Ca2+-ATPase 11 (TAIR:AT3G57330.1); Has 45699 Blast hits to 34603 proteins in 3211 species: Archae - 845; Bacteria - 31242; Metazoa - 4073; Fungi - 2705; Plants - 2048; Viruses - 3; Other Eukaryotes - 4783 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41570.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16690.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)
Link
InterPro Scan - TAIR