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11-1340-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4875173 [Map]; Strand: c
      • AT3G14517.1 - [+] show detail - transposable element gene
        Distance: -3034; Region: intergenic
      • AT3G14520.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 575; Region: intergenic
    Flanking Genome Sequence: 11-1340-1 - 3-prime edge 
    GTTCCCATTG ACTTTTTAGT GTCAGCGTTT TTTCAGTTCA CTTGAATTTC 
    TTAACAACAT CTTTAATCAG GGATTCTCCA TATCTTAAAT AGTTACGTTC 
    TGCTTCCTAG TAACTTGGAA ATAGAGGTTA AAAACAAAAA CAATCCCTAA 
    AGCTACACTC TTCAAGTTCG TCTCTATCTC TGCTTCTATA TGTGATGCAT 
    CTCAGCTCAT ACTCAATACG TCTAGTCCAT TAATTTAACT GCTTTTAACG 
    TTACTATACA GAGCTTAACA ATATACTAAT CTTATCTTCG GTTATTGTTG 
    GACCCATATG TGAACCGGGA AAAATGGGAG GGACAAAGTC ATACAATCAT 
    TTAAGTTGAT TTATGGAGAA TACAAGCTAT CATGTTTTTC AGTTAACCGG 
    TCACCTGACC TGTTCAATGT CTTAAGTGCA TTAAATTGAG TATTCCCTCA 
    AAGTTACGAC ATAACCGTCT TTACGATCAT GTCCTGTAAC AAGAACCACA 
    TCGGGTCAAC TGATCTGGTA TAGGCCTGTG TAGATACGGA GATTGGTCTT 
    AAGATAGAGA GGCACACTCT TAACGTGAGC TAGCTTAAGA ATGAACAAAT 
    TCAACATGGG TTAGAAGTTT TACGAGTTAA CCATGCAACA AAATGACTTT 
    ATATTAAATT AAAAATTAAG AATATTTTAN ATATTCAGTC TTGAGGCAGG 
    TAACAGAGTC ATAAATTT

AT3G14517.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G14520.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14540.1); Has 1704 Blast hits to 1673 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1700; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR