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11-1347-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3367279 [Map]; Strand: w
      • AT3G10745.1 - [+] show detail - MIR158A; miRNA
        Distance: -849; Region: promoter
      • AT3G10750.1 - [+] show detail - FBD domain family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1347-1 - 5-prime edge 
    CTTNGAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CCGTCCCTTC AATCGCTGCT CCTTGTCAAT 
    GTGGTGTATA AAGACCAAGA TTCTCATGTT AGGCTTTTAT TGAGTTGCCC 
    TGTTCTCAGA TATTTGTTGG TGATCCGAAA TAAGAGTGAC AATGTGACAA 
    GGTTCATTGA TTCGCAATCA CTTGAAAAAA ATGGTTCTGG TAGGTCATTG 
    GTTATAGATT CCCCGGGATT AAATTACCTT AGCATCATTG ACTCTTTAGG 
    AGGCAATTTC TCCATCCAGA ATATGCCATG CCTTGAAAAG GCCATCGTTT 
    CCCTCTGTGG TTTTTACCCG AATGACAAGT TTCTGACATC TTTCTCCTCT 
    GTCAAGTATC TCTATTTGGC TCATATCAAG GTAATTAACC AACCATTTTG 
    ATACCCTTCT CTCGTAATAT ATCTTATTTT CTTCGTGATA CTATCGCTGC 
    GTTTAATTAC TTATGTTGTG TTCTGCTTCG TTCAAGTGCA GGTTGCGAGT 
    TGTAGCACCA TTAACTTCTC TCGGCTCATA GAGTTTCAGT TGTATCCTTC 
    TTCCTCANAG TATTGGATGG AGCCACTTAT GCTTTTGCTT CATAATGCTC 
    CTAAACTAAA AGCTCTTCTA ATTTTTCCTC TTCTACTTTT TNTCCCTNCT 
    NTCCTTNTNT TNTANTTTNN NTCCCTNNNN TNATACCTNT TTTTTTNNNT 
    TTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3568065 [Map]; Strand: c
      • AT3G11385.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1347-1 - 3-prime edge 
    ATTTTGAAAA CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
    CCAGCATGCA TCCTTCCTAT CAACTCTAGT GATTACNACC CCGGGCCGAC 
    TANCANCCNT GCNCTANAGG AGGTATGTGC TGGTCTTCTT CGAAAACTGA 
    GTCATGCGTT ACACAAACAC CCTCTTATCC TAATCACCTC TCCTCGAAAC 
    CACTATGATC TCATCGATTG TTCAGCTTGT TCCAGAAAGT CCACTGGTTT 
    CAGGTACATA TGTCCGGAAA AAAAGTGTGT GTCCAAACAA GTTCAGATAG 
    ATGTTCGATG TATCTCATCA GTTCCCGAAT ATTTCACCCA TAAAAGTCAT 
    AAACATCCTC TATTTATCTC CACGTCCTCC AAAGGTGAAA ACAAGACTTA 
    TTGCGTGGGT TGCAAGAAGA TAGGTATGCG GTCTTACCTA CAATGTACCA 
    TATGCAAATT TGCTCTGTGT TATCAATGCG CTACAATTCC AACGGAAGTA 
    AGCTACAAAT ACGACAAGCA CCCTCTTTCT CTATGCTATG GAGAAAAGGC 
    AGATGAGACG TACTGGTGTG AACTATGTGA GAAAAAGGTT AATCCAAGGG 
    ATTGGTTCTA CACATGCAAC GAATGTTGTA TCACTATCCA CCTTCATTGC 
    TTATTTGGAT CTTCTTCTTA TATGAAGCCT GGTTTTAGAT TCAAGTATTA 
    CTCGTCCAAA GTGGAAGTTC GTCNCAACAG TGTCACTCGA CCGAATTGCG 
    TTNGAATG

AT3G10745.1

Model type
miRNA
Short Description
MIR158A; miRNA
Curator Summary
Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCCAAAUGUAGACAAAGCA
Link
InterPro Scan - TAIR

AT3G10750.1

Model type
Protein coding
Short Description
FBD domain family
Computational Description
FBD domain family; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G05080.1); Has 846 Blast hits to 813 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 846; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11385.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR