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11-1354-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2939323 [Map]; Strand: w
      • AT1G09100.1 - [+] show detail - 26S proteasome AAA-ATPase subunit RPT5B
        Distance: 0; Region: exon1 (5UTR)
      • AT1G09110.1 - [+] show detail - pre-tRNA
        Distance: -94; Region: promoter
    Flanking Genome Sequence: 11-1354-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGTA GGAAACAGAG TTTGGCTTTT GGGCGAAGAA
    ACAGCTTTAA TTTAATAACA CATGTATTGT ATTAAATATT ATCACAGTCA
    ATACCCAACC ACAAATCCGA TGTCGTCCAG CGGTTAGGAT ATCTTGGCNT
    TTCACCCAGG AGACCCGGGT TCGATTCCCG GCATCGGAGC GTTTTTGGTT
    TTGTATCCTT TTTATTTTTT TCACAATGTA TCTTATATCT ATTTTAAAAT
    CAAGTTATTG CTAAGCAATC TGGTCAAATT GATGATGTAG TTTTCTTAAA
    AGCTGACCAA AAAAGAAGTG AAGCCAAATG GAAACAAGTA AGAAACTGTT
    CAATATTCAA ATCGGAAGGG TGAAGAAGAG AGTTGAAGAT TGTATTTACT
    ATTGCTAACG AACAAACACA TTACAATTTT ATCATAATAT TTCAAGATCC
    TTTAAGTATG ATTCTCCTAA TCGCATGTTC ACATTTACCA AGTGATTTGA
    AACAAGGCAG TCTGCGGCCA ATGTGATTTT GGTCAGTCTA TTTGTTCTTC
    TCCATGACGC CTGCAAATGA GTAGAGTTCA AGCAAAATAC AAATCATTGT
    AAATACAAGC GTTCGTTCTA ATGATTTGCA GGTAAGTTAN ATGCATTTGT
    ATTTCTTCAT CANAAATTTC CATGAATNAN ATGGATTCAT GCCTANAGTA
    NCAATGGA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2939308 [Map]; Strand: w
      • AT1G09100.1 - [+] show detail - 26S proteasome AAA-ATPase subunit RPT5B
        Distance: 0; Region: exon1 (5UTR)
      • AT1G09110.1 - [+] show detail - pre-tRNA
        Distance: -109; Region: promoter
    Flanking Genome Sequence: 11-1354-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTGTGTCT 
    TCTGAGATCT CTCGTAGACT CTTACAGTGA TTAACTCAGG CTGCTAAGGG
    AGATGGCAAC GGCGATGGCG GAGGATACGA GCTTCGAGGG AGACCAACTA
    GCTTCCATGA CTACTGATGA CATCGGTAGA GCNTTCTCGT CTCTTAGCCA
    ACGAGATTCG CATCCTCAAG GTCACCACCC TCTCTCTCTT CTCTCTATAT
    TTTTAATCTG CTGGCTACTT GGAACTAGTA TATTTCTTCA TTCCAAGCTC
    ACTATTACCT TAATTTGATT AGCGACACTT TGATTAGTTT TGAAGAAGAT
    GGATGATGTC TGAGAGCAAC GATAACTCTT GTTTCATATC ACACTTTTTA
    TCAGTCAAAG ATATCGAAAT TCACTCAAAG TACTTGTTTT TATAGTTAGA
    ATAATTATAG AATATGATTA GAAGACATTT ATATTTACTG GTCTTTTGCT
    CATTGGATGA AATTCACCAG AAATTTTTGA TGTCTTTTTC TCTCAAATAC
    GTTGATTTGT TGTAGGAAGA ATCGCAGAGG ACAAACCTTG ATTTGGAATC
    AGTGAAGGAG AAAATAAAGG AGAACCANGA GAAGATTAAG CTTCCANCCC
    GGGCCGTNGA CCCCCCGCCC CTNNAAA

AT1G09100.1

Model type
Protein coding
Short Description
26S proteasome AAA-ATPase subunit RPT5B
Curator Summary
Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.
Computational Description
26S proteasome AAA-ATPase subunit RPT5B (RPT5B); FUNCTIONS IN: ATPase activity, calmodulin binding; INVOLVED IN: glucose mediated signaling pathway, proteasomal protein catabolic process, embryo sac development, pollen development; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 5A (TAIR:AT3G05530.1); Has 33470 Blast hits to 31156 proteins in 3185 species: Archae - 1434; Bacteria - 12401; Metazoa - 4942; Fungi - 3663; Plants - 3251; Viruses - 53; Other Eukaryotes - 7726 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09110.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Glu (anticodon: TTC)
Link
InterPro Scan - TAIR