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11-1356-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19387937 [Map]; Strand: c
      • AT2G47230.1 - [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 6
        Distance: 0; Region: exon2 (CDS)
      • AT2G47230.2 - [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 6
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1356-1 - 5-prime edge 
    GGTGGGACNA ATCACTGGAC CTGCATGGNT CCTCNGCTCT CNTGNNCNGN 
    NAAGCTCANG NGNCNATTAC ACGACCNTCA CGATGAATTT CTTCTCACCA 
    TCCACTTCAA TCTCTTTAAT TATCATAGCA GGGAACCACG CAACTTCAGC 
    TTTATCTACA ATAGTACTCA CTTCCGCCAT TGTCCCGGAG CTAAACATGG 
    ACTTATCCAA TTCCTTCAAG GAAAACAATC AGAAACATCA AAGTCTACAC 
    TAAGAATCAA AGTCAAAGAT CAAGCCTTTA ACCATTTCAA TCAAAACATA 
    GCATGCAACA ATACAGAGAC AGCTCCAAGC ATGAAAAAAA AACGGATTTA 
    ATAATGGATC ACAANATGCA ACAAATAAAA GTTTCAATCT TTANTAACAA 
    AGCAACAAAT TTAAGGAAAA AAAAAACCCN ANTNGGNTTA NNNNAACCNN 
    NGTNCCNNAN TATNNGGGNG GGAGCCNTTT CCANCCGGNC CANNNAAAAT 
    NAGGNCTTCA ANNNGGNTNC NCTCGAACNC AANNATNGGN ACGGGGGNNA 
    TTTTTAAATG CGCCCAAAAC TTGNCANTTN TCNCAATTNT TNAAAAAANA 
    ANANNNGNGC CCNCCATNNG TTNTNNNNGG ANNGANANTN AANCACNNGG 
    NNCTTNCCTT CAAAAGTAAT AACNGTTGNN TTNNTTNNTN CGGGCGNAAN 
    NGN

AT2G47230.1

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 6
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 6 (DUF6); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: Agenet domain-containing protein (TAIR:AT1G26540.1); Has 654 Blast hits to 571 proteins in 116 species: Archae - 0; Bacteria - 26; Metazoa - 156; Fungi - 34; Plants - 356; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47230.2

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 6
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 6 (DUF6); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: Agenet domain-containing protein (TAIR:AT1G26540.1).
Link
InterPro Scan - TAIR