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11-1361-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1791250 [Map]; Strand: c
      • AT3G05970.1 - [+] show detail - long-chain acyl-CoA synthetase 6
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 11-1361-1 - 3-prime edge
    NTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAN 
    AGAGATGACT NAAGAATTGA TNTAGAAGAG ATGATCACCT TTCGGGAGAC
    TCTGATTCAT ACTCAAAATT GTCATGGAGA GTAGCGATGT CAGGATGATC
    TGGGAATCTG CTAACGAGCC TTGAACGGAG ATTTTGCAGA TCTGAAAAAT
    TGAATT

AT3G05970.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 6
Curator Summary
encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes
Computational Description
long-chain acyl-CoA synthetase 6 (LACS6); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: long-chain fatty acid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain acyl-CoA synthetase 7 (TAIR:AT5G27600.1); Has 54528 Blast hits to 52136 proteins in 3333 species: Archae - 925; Bacteria - 35165; Metazoa - 2570; Fungi - 2253; Plants - 2087; Viruses - 1; Other Eukaryotes - 11527 (source: NCBI BLink).
Link
InterPro Scan - TAIR