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11-1370-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22317886 [Map]; Strand: c
      • AT1G60590.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -916; Region: promoter
    Flanking Genome Sequence: 11-1370-1 - 3-prime edge 
    CCTTCAAGAA TGGTTCGTAT AATTCTGAGT ACTGGATAGG GTTCATAAAA 
    ATAGTTTGGG TACGTAGTTC CTTCTAATCA CTATCCAACT CTTATTAATT 
    GGAATAATCG TTGGAGTTGT GTTTTGATAT TTTCAGATAT TTCAAGCAAC 
    CTTTAAATAA TTATTAGAGA TTTTGGACAG TTTAGGCTTA AAGTCCATGC 
    ATTTATCCGA GGGAACAAGT TATACTAATC CTAACGAGTA ATTTCAACAA 
    TCTAATTAAC TCAAAAGTTG GTGTTATTCA GGATTAACCA ATAGAATCAG 
    TTTTTCGGAC GCAAAATAAA CACATATCTA CATATTAATA GTTGTTATCA 
    TAAATGTGAT AGTGTAACGC CCCGATTTTG AACTTTCCGT ATGTAGCGAA 
    TTGGCCGTCG TATGAGATTA GACCCATGAG TCGAAAAATG ACATGGAACC 
    CATTAAAAGT TGCGGTCAGG ATTTTACAAA TAGCATTGGA GATGATTAGG 
    TTTCTCTTTA TCTGTTTTTT TGGAGATTAT TAGTTTATAA ATTAGGATAT 
    ATAATTTCAG GGGATATGTG TGCGCCACGT GTATACTAAA GGTTGGTTGA 
    GACTCATCCA CTATGGTNGG CTGAAACATA CACTANAGCA AGCCANGACA 
    AACATACCAC AAAGAGGCNC CTGTTCAGAC AAACACATAT ACCTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22317829 [Map]; Strand: c
      • AT1G60590.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -859; Region: promoter
    Flanking Genome Sequence: 11-1370-1 - 5-prime edge 
    CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCGTA TAGTTCGATG ATAATTTTAG ATACTCAAAT 
    TACTTGTCCA ATATGTATCA CTTCTTACCC GAAATAGACA GTCCTGAATT 
    TTGGCATCAA CTTGTATTTT AGTTTGTGTA GGGAATATAT TCCAGGACAG 
    TTTACTNGCA GTTAAGAAAA AAACACTGTA AAAAAAGTTC ATAGAGGGTT 
    GTTTTCAATA ATAGTTTTAC TGAATAATAA TGATTAGGAT ACTAAGATTA 
    CGTGCTATAT TATAATGAAA CTTATTAAAA AATTGGATC

AT1G60590.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR