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11-1393-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 453250 [Map]; Strand: c
      • AT4G01037.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase family protein
        Distance: -7; Region: promoter
      • AT4G01040.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -119; Region: promoter
    Flanking Genome Sequence: 11-1393-1 - 3-prime edge 
    GATAAAAGTC ATAAAACCCT CTTCTTTTTC CAGAATGATG TGTCCATCTC 
    TCTGATATCC TCTTATTGGT CTTTAACGTA ATATTTGACC AGAAGCAGGG 
    GTAAATATGG AATT

AT4G01037.1

Model type
Protein coding
Short Description
Ubiquitin carboxyl-terminal hydrolase family protein
Computational Description
what's this factor? (WTF1); CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT5G62990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01040.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 828 Blast hits to 823 proteins in 284 species: Archae - 0; Bacteria - 578; Metazoa - 178; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR