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11-1416-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7888440 [Map]; Strand: w
      • AT3G22310.1 - [+] show detail - putative mitochondrial RNA helicase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1416-1 - 5-prime edge 
    TTCTTGATGA AGCTGATCAG ATGCTTCAAG TTGGATTTGC GGAAGATGTT 
    GAAATAATAT TGCAGAAGTT GCCAGCGAAG CGTCAGAGTA TGATGTTTTC 
    TGCAACAATG CCAAGTTGGA TCANAATCTC TCACCAAGAA GTACCTGAAC 
    AATCCTTTGA CAATTGATCT TGTGAGTAGT CTTATACCTG CTTGTGTTTA 
    TATCTTAGAA TTGCTGTACA AATTGCAAAT ATTGATCTTG GCTGTAGCAG 
    TGTAGTTAAT GAAGTGACAT TTTTTAATGA CACATGTACT CTTATGTAAT 
    TTAGGTTGGA GATTCAGATC AGAAACTTGC AGATGGGATT ACTATGTATT 
    CTATCGCTGC AGATTCTTAT GGAAGAGCAT CCATCATTGG TCCTCTTGTA 
    AAGGTATGTT TTCTTTACTT TGCTTTTAAG CCAATTATCT GTATCTTGTT 
    TTGATTCTTC ATTTTTGTTT CCAGTCGTGA TTTTATAACA TCTTCTCCTT 
    TACAGGAACA TGGCAAAGGA GGAAAATGCA TTGTCTTTAC CCAACAAAAC 
    GTGATGCANA TCGCCTTGCA TTTGGATTGG CAAAAAGCTA TAAATGTGAA 
    GNTACNANNC CNGGCCGNNN ACCACCNGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7888324 [Map]; Strand: w
      • AT3G22310.1 - [+] show detail - putative mitochondrial RNA helicase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1416-1 - 3-prime edge 
    ATCAAGAACC ACAAACTGAA CCTCTGATAG ATTCAAAGCT CCCCTTTTCA 
    TCAGATCAAT GATACGACCA GGAGTTCCAA CCGCCACATC AATACCATAG 
    TTCAGCTCCC TCATTTGTTG CCCGATTGGT GTACCTCCAT AGAGACAAAT 
    AGTATCCAAA CTTGGAGCAG ATTCCCTGAA CTCTTTCTCA ACCTGACGAG 
    CAAGCTCCCT CGTCGGTGCC AAAACCAAGC ACTGAGGATT CTTCCCACGA 
    CTGTCACATC AAAAGACAAC ATAAGAACCA AAGGAAGTGC AAATCTCTCA 
    ATCACAAATG ATCGTTATAT ATAACAGTAA ACACAAACCC ATGTTTAGCG 
    TTGAATTTGA TGATTTTGTC AATAATAGGA ATCCCAAAAG CAAGTGTCTT 
    TCCCGTTCCA GTCCTTGCAC GGCCAATCAT ATCACGACCC TCCATCGCTG 
    GCTCCAACAC AGCTTTCTAT TCAACCAAAC ACAAACATCA AAAACTCAGT 
    TAAAAAAATC TAAACTTTTA ATTGATCTCT ATAACCAAAT GGAACAGAGA 
    AGAAGATCAT ATATACCTGA ATAGGAAAGA GTTTCTCAAT ACCCCTACCC 
    TTCAAAGCT

AT3G22310.1

Model type
Protein coding
Short Description
putative mitochondrial RNA helicase 1
Curator Summary
Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.
Computational Description
putative mitochondrial RNA helicase 1 (PMH1); CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1); Has 154573 Blast hits to 81509 proteins in 3841 species: Archae - 1406; Bacteria - 64973; Metazoa - 34940; Fungi - 12014; Plants - 11424; Viruses - 1269; Other Eukaryotes - 28547 (source: NCBI BLink).
Link
InterPro Scan - TAIR