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11-1438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1725085 [Map]; Strand: c
      • AT3G05790.1 - [+] show detail - lon protease 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1438-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAG CAACTGACTC TTCTAACCGG ATGGAACCGG
    AGTTCCTACG AATTGGGTCG TCGTTCTTTT TCCTCCGACT TGGATTCCGA
    CACAAAGTCT TCAACTACTA CTGTCTCAGC TAAACCTCAC CTGGACGATT
    GTCTAACNGG TTTGTTCAAA TTTTTTCAAG ATCACACNTT TTTTTTTTCC
    CNACTNTGGG GAATTTTNTN ATCNNGGGGA ANGTAAAATT NCCAAAANCA
    ATNGANCTNG GCNGGGGCNC TTNATANNCT TNNATTTTTN NTAAANCNTA
    NAAAAATCAN NTNANTNGGC AAAATTTTNT TTNNGGTTNT ANCNATGGNA
    AAGTNAAANC TNTAANCTTT ANTANCNTNG GTGGNAAAAT NCAAANTTTN
    NAAAAAATGG AGGGGGTTNA TAGNANNCNG ANNTTTNGAT NTNCCCAAAT
    TGGGANGGAT NATNCCNAGT TTNATAGNCN GGCAAAANCT AAANCCTTTT
    NTANNAAAAC CNTTTCCTCA ANCTTCNNTN CAATGGTTTN NNTNGACCTT
    TATGTGGTNN AATGGCAGGT TNTANCATTG CCATGGCCCC ANAAGCCTTT
    TATTCNNGGC TTTTACATGC CAATATNTGT NANGGGNTTT TACTTNAACT
    TACCTTTTCA AAATCNTANG NAAAAAANGG ATTTGGNNAT NTGGGGNNNN
    NCNCCNGNNG TNTAACCTNC CNCCCN
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1725101 [Map]; Strand: c
      • AT3G05790.1 - [+] show detail - lon protease 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1438-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTAACAATAG 
    ATTCTTAACC GGGGTAGACC GGAATCGAGT AGCCGGAGTC ACAGTGATGG
    GAAGCGTAAG CAGTCGGAGT GAGAAACTTC AGCATGACGG GGGAGGAAGA
    TCTTGAGTAG CGAATTTGGG AAATTAGGGT TAAGCT

AT3G05790.1

Model type
Protein coding
Short Description
lon protease 4
Curator Summary
Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.
Computational Description
lon protease 4 (LON4); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 17176 Blast hits to 15609 proteins in 2554 species: Archae - 375; Bacteria - 9875; Metazoa - 528; Fungi - 538; Plants - 282; Viruses - 3; Other Eukaryotes - 5575 (source: NCBI BLink).
Link
InterPro Scan - TAIR