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11-1468-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21160052 [Map]; Strand: w
      • AT1G56500.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1468-1 - 3-prime edge 
    GTCCACAGTG ACTTCAACTC CCATCTCCGT AAAAACATCC ACGGCGGCGC 
    GTCTAGAAAG ATCTTCACTG TTACAAAGCA CACCGTCCAT ATCAAACAGA 
    ACCGCCGATA CTTTCCCCCA ATCATCCGTC GCAATTGTCG CCGCAGGACT 
    CTCCGCCGCC ACACTCAGTT TTGTAGACGA CTGAAGCGCC GTCGTTTTGC 
    TTAAATAAAC ACCGGTTCTC GATCGAAATC CGGTGAATGT GGATTTTGAC 
    CTTATCGGAA TTAACGAAGA AGAAGATAAT CTCCTTGATT GTGAGAAAAC 
    TGAAGGCGGA GAAGTGAGTT TCAAAGCCAT TTCTTTGCTT TGGTTTTTTT 
    TTTTTTTTNN NGNAANNNTT TNAANCNNNT TNNTTNGGNN TTTTNAGGGG 
    GGGGGNTNAN TTTNCCNNAG GGGNAAANCC CCCCNNTNNT TTTTTTNTAA 
    GGNCNGGGNC TTTTTGGGTT TTTTNNTNAG GGNNGNAAAA GGGTNNCCNA 
    AAAAACNGGG CCCNTNAAAA NTTCCNACCC GGGGCNGGNA NCNNCCCNGG 
    NCCNTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21160168 [Map]; Strand: w
      • AT1G56500.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-1468-1 - 5-prime edge 
    CTGTGGACGA TTTCGTTCCT TTTATGGGAA CAGGTAAATG CTTTGAAAAT 
    TTGGAAAATC AACTTGTTTA TTGGTTGATT TCGTTAATTT CATTGGTTTG 
    GCAATTAACA GGTGAAGCCA AGTTTTTAGG AGGTGTTGCT TCAGTCAAAG 
    AAGTTAAAGG ATTTGATCCA GATGCAGCTA AAGAGAGATT CTTTGAAATA 
    TATCTCGATA AGGTGATTCT TGATTAGAAA AACACTGTAG GAGGGAACTT 
    GTTGATGTTA TTGATAGAGA ATGTGATTGA TACTCGTGCT TTGTTGTGTT 
    TTGATTTCGC GTATTTTCTT GTGCTTTACT TATGATATAG TATGCGAAGC 
    CAGAATCTGG GATTGGATTT CCAGGAGCAT TGGAGCTTGT TACTGAGGTG 
    AGGAAAAATG AGGTTGTTGA ACAATGATGG TTTTGAGGTT AGAGATTATG 
    ATTTGCTCTG GAACTTTTGA AACAGTGTAA GAACAAAGGC CTTAAAGTCG 
    CTGTTGCATC TAGTGCTGAC CGTATCAAAG TTGATGCGAA TCTGAAAGCT 
    GCTGGTTTGT CTTTGACCAT GTAAGACTAA AACAATCTTT TATCTTTTGA 
    CTACTTCATT TCCTATTACA CAAGTTTGAA TTACCANNCC NGGCCGNNGA 
    CCACGCTG

AT1G56500.1

Model type
Protein coding
Short Description
haloacid dehalogenase-like hydrolase family protein
Computational Description
haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Low-density lipoprotein receptor, class B (YWTD) repeat (InterPro:IPR000033), Thioredoxin fold (InterPro:IPR012335), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Thioredoxin-like (InterPro:IPR017936), NHL repeat (InterPro:IPR001258), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT3G07060.1); Has 23445 Blast hits to 20574 proteins in 2565 species: Archae - 340; Bacteria - 17044; Metazoa - 1036; Fungi - 332; Plants - 721; Viruses - 3; Other Eukaryotes - 3969 (source: NCBI BLink).
Link
InterPro Scan - TAIR