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11-1475-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3647373 [Map]; Strand: c
      • AT1G10920.1 - [+] show detail - NB-ARC domain-containing disease resistance protein
        Distance: 0; Region: exon2 (5UTR)
      • AT1G10920.2 - [+] show detail - NB-ARC domain-containing disease resistance protein
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 11-1475-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTCAGCCATA ATAACCCTTT ACGAGAAAAT TTCATGGACA GATCGTTCTA 
    GTGAGACTGA GACAGAAGAA ACATTTACTA AAACAGAGAA GAACTTGTTT 
    AGATAACAAA CCTGTAGTAA GTATTGACTT AAAGATTCAG GTATTGTTTA 
    TATTATTATA TTATATCAAA TGGAACTGGT TCAGAATCTC GTAATAATTT 
    CAGGATTTAT TTTGAAGCAA ATTCCACTCA CCACAACAAA GTATAAACGA 
    CGGATCAAAG CAAAACAAGC AGACAAGAAT TTACCTTCTG TGAAGCAAAA 
    AAGAGCTTGT GTGGTCACGA CAAGAAGAGC CTCAGATAAA AGTCCAGTGA 
    GAGGGTTGAC CCAAAGTCAA CCTTGTCTAG CTAACCAATC CATTGGCTGA 
    AGTGGTTTCT TCACAATAAT ATCTCTTATA TTATTAATCT CTTATATTAT 
    TAATGATCCA TCGCCACCTG TAGGTTCTTC ATTCTAATCA AATCTCAATA 
    TATGATTGAT TAAAAAAAAA AAAAAAATCN TTAAANAANC CNCCCTTTAA 
    NAACNAGTTT NTTNANTCTC CNGACCTTTA GGGCCCTTGN GNGGGCCCNA 
    AAGTTNACAA AATTTTCCNC NAAATTTNTT TACCACNAAA TTTNNGGGGG 
    GCAAACTTTC CCCCGGGAAT CCTTTCCCTN CGGGNGNTTT TTGACCCATT 
    TTNNTTTTTA AAAAAAAAAA ACCC

AT1G10920.1

Model type
Protein coding
Short Description
NB-ARC domain-containing disease resistance protein
Curator Summary
Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.
Computational Description
LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1); Has 17113 Blast hits to 15625 proteins in 596 species: Archae - 16; Bacteria - 1275; Metazoa - 1625; Fungi - 139; Plants - 13787; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10920.2

Model type
Protein coding
Short Description
NB-ARC domain-containing disease resistance protein
Curator Summary
Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.
Computational Description
LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G48620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR