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11-1500-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7366882 [Map]; Strand: c
      • AT5G22250.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -104; Region: promoter
    Flanking Genome Sequence: 11-1500-1 - 5-prime edge 
    GCTGTTGCTA CAATTTCGTG AAAACATTAA AGCACAATCA GATACGGTGT 
    AGACATCATC ATAATCTAAT GATTCAACCC TTTAATGCGT TTTTAGTGCG 
    TCGTTACATA TTCAGTGTTT ATTGGTAATA TAGCAATATT CCTGATAAAG 
    TTCATTGGTC GTAAGTCGTA ACGTTTACAT GTTTTATTCA ACTCTTAAAA 
    ACCAATAGAA AATCTTAATG TACTTGGCCT TCTTATTCTT GNCGGCTTAA 
    TGTACTTACT TAAATACAAC GACTTGAATT GCAATAATTC GATACACGAA 
    GGAGAAGCCA ACTTAGACTA AGTCAAGAAA CACATTGAAT CATAAACGTG 
    CGCGTTTCTC ACACTTCTTC TCCTCTCCTT CCTCGTAAAC ACTCTCTTAC 
    TCACATTCAT ATATATAACT AAACCTTGCA GATTAACCAA ATCAACAAAA 
    AAAAACAGAC TTTTGATAAA TTCACAACGA AGAANAAGAC CTAAAANATC 
    GGGACTTGAA ACTATGATCA AATCANAAGC AGATCTCTCC GATGTGATCG 
    NGATTCGNGA CGTTTGGGCT TATAATCTCG AGTCAAAGTT TGACCTANTC 
    ANAGGAATCG TCGAANATTA CCCATTCNTC TCAATGGATA CAGAATTTCC 
    CGGNGGGGAT TTACAGGGCG GATCTCNACG TTCCCNNCCG GGAAACCCTA 
    ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7366998 [Map]; Strand: c
      • AT5G22250.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -220; Region: promoter
    Flanking Genome Sequence: 11-1500-1 - 3-prime edge 
    GCAACAGCGA AGCCTAGGTT GAGCCCTTTT CAGTTTTCAT TGTTCCCTAG 
    TTTACTCATC GAATCTCATG ACTTTGTTGG TAGTGTTTAG AAGATTGTTC 
    TTCCAGATTT GGATGTAAGT CCCAATTTCT AGAAACAATA TCACAAACGT 
    AGATAGTCCG TGGAGTTTTC CATCTTCAGT CAATATAATA AGAAACTTTT 
    TAGGACGTTG ACCTTGAACA GAGTTGTTAA ACACATGACT GTTTTTCTTT 
    CATTTCCTTT GTTTGCAATA ACTTGATATT GTTCCATGTT AATGAAGAAA 
    TAATTTATTA ATTCCAAATG CATCAATTGT AAAACTAAAT TATTTAAATT 
    ATGTAAACCT TCTTTTGTTT GTAATTTTGT TTTTGCATCA ATTGTAAGCC 
    TAAATTATTT AAAACACTAC ACACTTCTTT CTCCGCCTTG TGTTGTGAAT 
    TATTTTCTGT TAAAATTTAA CTGCCTTTTC TTGGAGACAA GCCTTAAGGT 
    TGTTGTCAAG TAAAACTTGG AATCACGGTT GGAGTAGATG ACGTCACATG 
    AGTCATCAGG GGAAGAGGAG AGCGACATGT TGATAATGAT ATTATTAGAA 
    CAGTCAGGCT CCAGAGGAGG CAAGGATATG ACTTTGTGAT TCAACATGTT 
    GGGTGATATA NACGCAGGAG GGATCATTAN AATT

AT5G22250.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G44260.1); Has 907 Blast hits to 897 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 150; Plants - 381; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR