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11-1509-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1515821 [Map]; Strand: c
      • AT1G05230.3 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon4 (CDS)
      • AT1G05230.1 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon4 (CDS)
      • AT1G05230.2 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon5 (CDS)
      • AT1G05230.4 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 11-1509-1 - 5-prime edge
    CCAACAGCTA TCGGAGAAAT GTCATTCGAC GAACACCAAC TCCGTCTCGA 
    AAATGCTCGA TTAAGGGAAG AGGTATGAGA ATCAACTATT TTAAATGTTC
    AAATAATGTT AAGAGTTTTA CACNTTAAAT GTTGTCAAGA AGATAAAATA
    AAAAATTAGA ATTTGTTTTT ATACCACTAA TGTTATATCG CTTTCAAAAC
    AATCATTTCT TTCTTCATAA AATAAAAACT TTTATAGATT TGTATTGAAA
    TTAGAGAATT TAAACATTTT TTTTTCATTG AAGAATANAA AAAATTATGA
    TATTAAATTG ANATACTAAA ACGATNTTTT TGGAACTGTA AGGAGTAGTA
    GTNCATAATA ACAACATTAC TCAACGTTTC TTNTTGNGAC CAAACTTTGA
    AAACCACAAG GATCAATAAT CTTTCTTATT TGTCTGTTTT ANATCGACCG
    TNTATCCGCA ATCGCAGCTA AATACGTAGG CAAGCCNGTC TCAAACTATC
    CACTTATGTC TCCTCCTCCT NTTCCTCCAC GTCCANTAAA NCTCGCCANG
    GGGAATATTG GAGGAGAANC TNCNNNNNNG GGNCNGNGAC CNANCGTGCC
    CNNNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1515937 [Map]; Strand: c
      • AT1G05230.3 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon4 (CDS)
      • AT1G05230.1 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon4 (CDS)
      • AT1G05230.2 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon5 (CDS)
      • AT1G05230.4 - [+] show detail - homeodomain GLABROUS 2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 11-1509-1 - 3-prime edge
    GCTGTTGGAC CACCACAATT AGGACACGAA GCATTTGCAA GAGCCTCTCG 
    ATATCTTAGG TTGTCGTTTC GAAGCT

AT1G05230.1

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6110; Fungi - 222; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.2

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8732 Blast hits to 8653 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6111; Fungi - 223; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.3

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05230.4

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR