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11-1514-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15827390 [Map]; Strand: c
      • AT5G39530.1 - [+] show detail - Protein of unknown function (DUF1997)
        Distance: 0; Region: exon1 (CDS)
      • AT5G39535.1 - [+] show detail - pre-tRNA
        Distance: -293; Region: promoter
    Flanking Genome Sequence: 11-1514-1 - 5-prime edge 
    CCACCGGCCG GTGACGACGG AGGTGAGATC ACTATTACGG TCCAGAGTGA 
    TGTGCCAAGT GTCATCCGTA AAACCCGCCA CGTATTCATC GAGACTCTCC 
    ACAGATATTC CTCTCAACGA GTCTCCTCAG GTTCTACNTT CTCTTCACTT 
    TACTACGCAT CGATGTTTTT ATTTTTTTTT GGNGGGTTTA ATTGANATTT 
    TGACCATCTT GNGGAATTTT TCAGGCTTTG TTCGATGAGT ATTTANAGGA 
    TAAATCAANA GTATTCGAAG CAATGTTTCC ANATAAGCCC ANAAGTCATA 
    GGCTTAACGA GGTACTATCG AAGTTATAGT TAAGTACATA TAGAGTAAAA 
    TAAGTCTTCA AAAATGGGCA TTTGGTCTAG NGGTATGATT CTCGCTTAGG 
    GNGCNANAGG TCCCGAGTTC AATTNTCGGA ATGCCCCTAT TTTTGTTATG 
    TCCTTCTTTT TATTNACTTG NCTTTTTAAT TGGAATGAAT CGAATTTGNG 
    TTTAGGAAGA ATGGANAATT ACNANCCCGG GCNGNNANCA NACNNGNCNC 
    TA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15827506 [Map]; Strand: c
      • AT5G39530.1 - [+] show detail - Protein of unknown function (DUF1997)
        Distance: 0; Region: exon1 (CDS)
      • AT5G39535.1 - [+] show detail - pre-tRNA
        Distance: -409; Region: promoter
    Flanking Genome Sequence: 11-1514-1 - 3-prime edge 
    GCCGGTGGTA ACTTCTGAAC ATCCCCGACG ATAAAACCGA AGACCTCGCC 
    GTTATTTCTC CCATTATCTC TCTCAGATAT CAGATCTTTG ATCTCTTCAA 
    CATATTTCTC TCTCACTAAT CTCCAAGTAA AGATTCTTGC TTCGTCAAGA 
    CTCTGTGAAC AAATTTAGAA GAAGATACAG AGAGAGTAAA GTTGTATAAA 
    GAGAGATTAG GAAGATGATA AGAGATATCA GCCTTTTGGG CTTCTACGTC 
    CACGTGGCAT ATCACTAGCT TATCCACGCC ATCAAGATTT GGAATCTGTA 
    GGGTCTTCTT TGCTTTAGCT CCTTCACCTT CGCATTCGTG GATGAGAATG 
    ACACGAAATA AACTTGAAGA TCCACTGACA AAAACTTTGT ATGTGTTACA 
    ACATGGGGAC TATCATAACA AATGACCAAA CCCAAATTCT TAAATTTTTA 
    GTGAGGCAAG AAGGGTCACT TCTTAAATTT TTAGTGTTTG TATCTAGTCT 
    TAAAAAGGAC TATCTTGTGT TCTATACATG CTTGCAATTT CAATTCAAAC 
    TCTACCAATG ATCAAGTTAT TTTTATTTAA GCT

AT5G39530.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1997)
Computational Description
Protein of unknown function (DUF1997); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G39520.1); Has 204 Blast hits to 204 proteins in 68 species: Archae - 0; Bacteria - 103; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G39535.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Pro (anticodon: AGG)
Link
InterPro Scan - TAIR