1. Home
  2. Mutant Lines
  3. 11-1516-1

11-1516-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16975766 [Map]; Strand: c
      • AT1G44910.1 - [+] show detail - pre-mRNA-processing protein 40A
        Distance: 0; Region: intron1 (5UTR)
      • AT1G44910.2 - [+] show detail - pre-mRNA-processing protein 40A
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 11-1516-1 - 3-prime edge 
    GTCGTCCTCG ACACTCTCAG ATTCATCATC GAACCTGGTA TGAGCTCTCT 
    TTCGTCTTTG GTGCTCTACT AGTTAGGGTT TCGCCATTAC TATCTCCATC 
    CTCTGTTCCC AGAGTTAGAA TTTTTCTTCT GAAAACGCGA ATTAAGCTCG 
    ACGTTGAAAT GTTTTGCTCT TCAGATTAAG ACGCGAATTT GAGAGGAAGC 
    T

AT1G44910.1

Model type
Protein coding
Short Description
pre-mRNA-processing protein 40A
Curator Summary
Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries.
Computational Description
pre-mRNA-processing protein 40A (PRP40A); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B (TAIR:AT3G19670.1); Has 113757 Blast hits to 61097 proteins in 2531 species: Archae - 390; Bacteria - 9660; Metazoa - 51291; Fungi - 12468; Plants - 6867; Viruses - 622; Other Eukaryotes - 32459 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G44910.2

Model type
Protein coding
Short Description
pre-mRNA-processing protein 40A
Curator Summary
Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries.
Computational Description
pre-mRNA-processing protein 40A (PRP40A); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B (TAIR:AT3G19670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR