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11-1522-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20506964 [Map]; Strand: c
      • AT1G54970.1 - [+] show detail - proline-rich protein 1
        Distance: 476; Region: intergenic
      • AT1G54980.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 411; Region: intergenic
    Flanking Genome Sequence: 11-1522-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CACACACCTA CTTTTCTTCG ATATAATCAT 
    GAACATGTCT TATCAATTCT CCCCCCATTA ACCAACATGT TTTGCCTTTA 
    CATTCTGTTT CTGCCTACCG TCCCGCTCGG TACATGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20506970 [Map]; Strand: c
      • AT1G54970.1 - [+] show detail - proline-rich protein 1
        Distance: 482; Region: intergenic
      • AT1G54980.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 405; Region: intergenic
    Flanking Genome Sequence: 11-1522-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGTGTACGCG ACTAAGGTCA TGTAAATCTT ATAATGGCTT CTTTAGGGTG 
    GATTTTGGTG ATTCTTGGAA AACTAATTTT ATGATAGAAT T

AT1G54970.1

Model type
Protein coding
Short Description
proline-rich protein 1
Curator Summary
encodes a proline-rich protein that is specifically expressed in the root.
Computational Description
proline-rich protein 1 (PRP1); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 3 (TAIR:AT3G62680.1); Has 45300 Blast hits to 21383 proteins in 1373 species: Archae - 227; Bacteria - 7064; Metazoa - 17109; Fungi - 5177; Plants - 7680; Viruses - 1757; Other Eukaryotes - 6286 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54980.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G50070.1); Has 38 Blast hits to 38 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR