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11-1528-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18205612 [Map]; Strand: w
      • AT4G39070.1 - [+] show detail - B-box zinc finger family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-1528-1 - 5-prime edge 
    AATGTCACAT TCTCTGCATA GTATTGCTCT GTCTTCTTGG CAAAATAATA 
    ATGCACGCCT CTCCTGTCAT ATGTATAAAG GTTTAGTACC ATTTAATAAT 
    AGATAATCAA GAAGACTCTT GTTTTGTATC CATCTATTTT AAAACATACT 
    TATCTGCTAG ATTTGACCTT TTCAAACAAA AAAGATTGCA TTGTATTGTT 
    TTATTTTATT TAATGAACGG CAAAAGGAAA TATTCTTTTC TCCACGGCTT 
    ACCTTCCCAA AGAAGAAACT ATTTTAATAT CGTAATAACT AATAACTCGA 
    TTTAATTGAT TAATATCTTA AGTTTGATTA GTGTGTAACC AAATAATTCA 
    CGAAAGTGTT TGGTAAGCTC AATCTCTGTT CTGTTTTTAG AAAAGTAATA 
    TTTTGGTCGT GGCCATAAAA TTCTTCGTCA AAAATTGTGT GAGACCTCAA 
    ATTTGCTAGG AAAGGAAGTA AACTTGTTGC CAAATAATCA TTTTCTCACC 
    AACCAACAAA CAAATCTCGG AAAGAAAAAA GNGACTCAGG TCACCCCAAA 
    CATCGGTTCA TGAAACCCAG ATTTCCATCA ATNCTAACAT ATNTAAAAGC 
    TCACAAATTT TNCAAGNGAA GATTATAATT NTATCAAAAA AGGGNAAAAA 
    AAAAAAAAAA AGGGNNAAAT TTNNNGGTAC NNNCCCNNNA AATTTNNNNA 
    NGAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18205499 [Map]; Strand: w
      • AT4G39070.1 - [+] show detail - B-box zinc finger family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1528-1 - 3-prime edge 
    GNGANACNCN GNCGNGCGGN TCACCAGAGC NNGNCNGNAA ACNNCNCGNN 
    CNCTNNNTTA CCGGCTGTTA ACGATNGTCT GCCTACCCGT CAGCCTACCC 
    ANGAGCCTCC AATTNCAACT NGTGCTGCTG CATTGGGTCN AGCCANAACC 
    CGACCAAAAT CAGNATCNAG CGAGGTCCCG AGCTCGGCCT CCAATGAGGT 
    ATTTACGAGC TCTCCTTCGA CGACCACGAG CAATTGCTAT TATGGGATAG 
    AAGAAAACTA CCATCACGTG AGCGATTCGG GGTCGGGATC

AT4G39070.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Computational Description
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: response to karrikin, response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: salt tolerance homolog2 (TAIR:AT1G75540.1); Has 1892 Blast hits to 1305 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1793; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR