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11-1529-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3352261 [Map]; Strand: w
      • AT3G10710.1 - [+] show detail - root hair specific 12
        Distance: -28; Region: promoter
    Flanking Genome Sequence: 11-1529-1 - 5-prime edge 
    GNNNTCANCT CCAGAGAAAN GNACGNCNCN CNNCTNCNAG CGCAGNATCA 
    NAAGCANNGG GANGAAGANN ANGNGTGNAG GGANGGAGGA TAGNGCATCT 
    GNANNCTCNT GNNCGGCAAA GNCGAGGANC GTGATCATGN TAGGATACGA 
    AGCTCGGCGG AAGACGAGAA AGAACATNGC GATCATCTGC TGGANCACNA 
    GTAATTCTTG CCGGAAGNGT GATGGGAGCN GNGTTTGGAN CCATGGCTCA 
    CAAGAAGNCA CCAGAGACNG TGGAGACTAA TAACAACNGA GACNCAATCT 
    ACGTNGAATC CTTNNGNCNT ANTNNGAANA TTANTNAAAA NAAAAACTTN 
    GANNANTATN GGNTNNGGNA NTNGNNANAA AATTAGAANT ATTNAAACAA 
    AAANNNAAGG TNNATGGGAT GGTAAGGAAG NGGGGCGAAT TGNTGAGTGN 
    NGGGGNTNAA GNAGGACAAA NANGAAANAA ACAGTGANNG AANAAACNAC 
    NCAGGCAAGC GCNGNGAANC AGCNCGNGGC NCANNANAGC GGAGCNAANA 
    ANNANCNNAA NCANGAGNNG GNNAGCAGNN AAANGAGNAG NGGGAAGGAN 
    NGNNGGNANG NCAAANNTAN GAAGCANGCN GATNCGCGGA GNAGACNNCG 
    GANNGAGAGA NGAGANGGTN GAGNGGTGGT TAACACNTAA NGGGGGCGNN 
    GNNNGCNNCG GNTNNTNNCG GNGTGCGGAG AANANNGGTC A

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3352191 [Map]; Strand: w
      • AT3G10710.1 - [+] show detail - root hair specific 12
        Distance: -98; Region: promoter
    Flanking Genome Sequence: 11-1529-1 - 3-prime edge 
    NTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTACCAATAG 
    GTCCATATAA AGACGAAGGA AAAATATAAT CATTTGAATA GACCTCTAAC 
    AACTTACGTG CGAGGCACAA AGGGGGATTA TAAATCTTCA CATTAAAATA 
    CCAAGGATGT ATTTAACTAC AAGTGCTCCT CATGTTTTAG TCTTTTATGT 
    TAATATAAGC T

AT3G10710.1

Model type
Protein coding
Short Description
root hair specific 12
Computational Description
root hair specific 12 (RHS12); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: root hair, flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04960.1); Has 2830 Blast hits to 2766 proteins in 319 species: Archae - 6; Bacteria - 575; Metazoa - 1; Fungi - 191; Plants - 2032; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR