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11-1537-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26673198 [Map]; Strand: w
      • AT5G66810.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595);...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1537-1 - 5-prime edge 
    CNGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC CTCCATCTCC ATTATCGTCT CCTTCTTCTT 
    CTTCATCTCC TTCTATTTCC TCTTCTTCTT ATCACTCCAG ATTGATCATT 
    CGCCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26673199 [Map]; Strand: w
      • AT5G66810.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595);...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1537-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    NAGAGGTGAN TTGACGGCGG CGGCGGCAGT CTTNNACCAG GTTTTNAGAG 
    CTAACCGAAA TCGATGATGA GAGCATCAAG CGCTTCCCAA TTTACAGGTG 
    TGGAATCCAT AGTTGCTTTC CTCTTCCTCG GTTCTTCTTT TGTCGGCGAC 
    GAGAATCGGC CGGCGATCTT AGATTGTGGG TGGGATCGAC GATCGCTTTG 
    TCTTGTGTGG GTGAATTTTG TTTCGTGAGG AGAACAAGTT AGAAA

AT5G66810.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR