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11-1549-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8941774 [Map]; Strand: c
      • AT2G20750.1 - [+] show detail - expansin B1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1549-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GAACCGCCGG TACCTCTTCG CGCTATCTTA TTATTTTATT TGACTACTAT 
    ATGCTAACGA ACAAATAATG AGTACATTTA AATGGTTTTT TCTTACATTG 
    GGAGGAGTAA ACAAATAAAG AAACTTTAAC GGCGTTCTTG TTTTTTATCG 
    ATGGTCCCAT ATTTTGAGCT TTGACTACAC ATAAACACAA ACACACATAT 
    GGATCTCTGA CACACTTGCA CTTGTTTGTT TTTTGCAAAA CAGAACGGCA 
    TGCAAATACA GAGGGAAGAA CATAGCGTTT CATGTGAACG CAGGATCAAC 
    NTGATTATTG GTTATCGCTT CTCATTGAGT ATGAAGACGG TGAAGGAGAC 
    ATTGGCTCTA TGCACATTCG TCAAGTAATA TTTCTCATTA GTCTCTCCCA 
    CATTTTCTTT AAAATGTATA CTTAATATTA CTTCATTTGT ATGTTGATTT 
    ATGAAGGCGG GATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8941710 [Map]; Strand: c
      • AT2G20750.1 - [+] show detail - expansin B1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1549-1 - 5-prime edge 
    CCGGCGGTAG AGGATGTTTA ATAGGCCACG GTTGCGGATG ACACCGTTAT 
    GGCCGGGAAT AGCCATATGT CCAAAGGCGG CGCCACTGAG GTCGAAATGA 
    GTGTGTTTTG CTTTAGCAGA TGGTCCTGAC GGTGACTGGT CGGTGGCAAT 
    AATGGTGACT GCTCTCTTAG AGCAAATGGT CTTGTCGAGA CACCTGACCT 
    TGTAGCATGC ACCGCA

AT2G20750.1

Model type
Protein coding
Short Description
expansin B1
Curator Summary
member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational Description
expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR