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11-1579-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30039098 [Map]; Strand: w
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon5 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-1579-1 - 5-prime edge 
    CCTGCAGGCT TCATGCTCCG ACGATCAAGA ACACCGTCTC GGCTCTCTCG 
    ATTTCTACAC GGGCGTCTTT GCCCTCGAGA AGTCCCGTAT CGCCGAGATT 
    TCTAACCGAG CCACCCTTGA ACTCCAGAAG ATGGCCACCT CAGGCGAACC 
    TATGTGGCTC CGCAGCGTTG AGACTGGCCG TGAGATTCTC AACTACGATG 
    AGTACCTCAA GGAGTTTCCC CAAGCGCAAG CCTCTTCGTT TCCTGGAAGG 
    AAAACCATCG AAGCATCTAG AGATGCGGGA ATTGTGTTTA TGGACGCACA 
    TAAACTTGCC CAGAGTTTCA TGGACGTGGT ACTTTTCCAT TATTTATTAC 
    TGTTACCAGC TACTATAACT TATTCTATGT GTATAAAAAG GAATTGATGT 
    GTACGTGTAA CGCGCAGGGA CAATGGAAAG AGATATTTGC ATGCTTGATC 
    TCAAAGGCTG CAACGGTCGA TGTTATCCGG CAAGGCGAAG GGCCTTCACG 
    GATCGACGGG GCCATTCAGC TGGTGAGTAC TCATCAATAT ATACATATAG 
    TGATAATTGA TGAATGACGA CTCAGCTGAT ACATGGGATG GATATGGTTT 
    ATAACTACTG TGGCAGATGT TCGGAGAGAT GCANCTGCTC ACTCCGGTCG 
    TCCCCACAAG ANAAGTGTAC TTCGTGAGAA GCTGCCGGCA GCTGANCCCT 
    GA

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR