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11-1619-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12487430 [Map]; Strand: c
      • AT2G29070.2 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G29070.1 - [+] show detail - Ubiquitin fusion degradation UFD1 family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 11-1619-1 - 5-prime edge 
    GGGANAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CAGGGTTACA ATCCAAAAGA TGAAGAACAA TAAATTCAAC 
    TAGAGCTTGA TCAACTTCCA CTGTACCAAG GATTAAAAGA TCCGATTATA 
    GAGTTTTGAA GCT

AT2G29070.1

Model type
Protein coding
Short Description
Ubiquitin fusion degradation UFD1 family protein
Computational Description
Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 693 Blast hits to 691 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 203; Plants - 125; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29070.2

Model type
Protein coding
Short Description
Ubiquitin fusion degradation UFD1 family protein
Computational Description
Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR