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11-1631-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21958462 [Map]; Strand: c
      • AT5G54110.1 - [+] show detail - membrane-associated mannitol-induced
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1631-1 - 3-prime edge 
    AGGCTATGTC CGTTTTGGCA GAGGAGAAGC ACCACTTCTT CATCTTCAAC 
    ACAGAATCCA AACCAAAACT ACCGTAGCCG CCATGGAAAT CGGAATACAG 
    ATATTTCCGC CGTCTCTAAG CCTCCGTTGA CTATGTCTTC CGTCGCCAGA 
    TCACTTCTTC CAGCTCGCCG TCGTCTCCGA CTAGATCCTT CTAGTTATCT 
    GTATTTCCCT TGTACGTCTT CTTTATTTAA GTTTCTGCCG TCGATTTAGC 
    TTGATTCAGA AATAGTCATA GTTCTCTGGA AATTGATTGA TTTGGTTATG 
    GATTCTGATT AGAGAATCGA AGTGATTAAC ATAGGCTCTC TGGAAGTGAT 
    TGATTTGGAT TTCCATTGTT AGAGAACGAA GTTAGAATTT GTGGATTTGT 
    GTTTGTTTCA GATGAACCTG GAAAACAAGT TCGCAGCGCA ATAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21958346 [Map]; Strand: c
      • AT5G54110.1 - [+] show detail - membrane-associated mannitol-induced
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-1631-1 - 5-prime edge 
    CATAGCCNGA AGAGGTNCTT CTTCTTCTCC ACACTCGGAT TCTGACGGCC 
    ACCTATTGGC ATNGGAAATA ATCAATTTTC CGGNGACCGG ATGATACTTT 
    CCCGAGTTTC GAATAATCTT TTGGTTCTCT AGGAAGAGAG ACAAATTGGT 
    GTGAATTTCA AAGGAGGACG ACGAANAATC GACAAAAAAT GGCGTTTNGT 
    TTTGGCGTTN TACTTCTGCG TCTGCGAGAG GGTCACTGTG TTTTTCTTTA 
    AAATCGGATT TAGATGAATT TATAAATTTT AGTAGTTTAT AAGTTTTCTG 
    TTAAGTCCGT GTGAAAACGT GTTTTGACAA ATAAAAGTCC AATGGATGTT 
    TCTTTCGGGG TTGGAATTTA TATAATGGAA TTGAAAATCA GTGATTATTG 
    GTTAGTTGGT TTGGTTGGTC GTGAATTTAT CTTTGGATTC TTTCTTGTCT 
    TTGCATTTGG TTGGTAGGCT TATATATATC ACATCTCAAC ACAAGTCATC 
    ATGTAAACTT TTGGATTTGT TCAAAAGTGT TTTTTGGTAT ATGGATTTTT 
    TTTCTTTTTT TCTACCCATA TAAAATATCA TTATTAGGNT TTACAGACTT 
    GCTAAATATT GGAGATAAGT ANTNCTANNG GGCNGCGTTT GGNTNTTGGG 
    GCTTANCCGA CTTAAAACTT ACTTGGGNNG GNANGNCNCC NCTAGGGTTT 
    TGG

AT5G54110.1

Model type
Protein coding
Short Description
membrane-associated mannitol-induced
Curator Summary
Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane. It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking.
Computational Description
membrane-associated mannitol-induced (MAMI); FUNCTIONS IN: structural molecule activity; INVOLVED IN: response to osmotic stress; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G21450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR