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11-1635-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18219855 [Map]; Strand: w
      • AT1G49250.1 - [+] show detail - ATP-dependent DNA ligase
        Distance: -678; Region: promoter
    Flanking Genome Sequence: 11-1635-1 - 3-prime edge 
    CATGGGTGTA GGTAATTTCA CAAGATCTTA ATTTGCTTGA ATTTTCATAT 
    CTCTCAGGTT GGTGTGATGA AAATCAAGAT CTCTCGTCTG CTAACTTACT 
    TCTCTGACCA GGAATGGCAA TGCAACTAGC ACGTGAAGTT GTCACTAATG 
    CCTCTGTGAA TCTAGACCCA ACATATGTAG AGGGGGTTTG ATGCGGTACC 
    TAGCAAAAAT CTGTCGCTTA CTAGTGGAGC TCTTCTTCAG GCTTTCAGTA 
    AGAAAAAGAA GCATTCAACT AATTCAGGAA TTGACGCAGA GAATT

AT1G49250.1

Model type
Protein coding
Short Description
ATP-dependent DNA ligase
Computational Description
ATP-dependent DNA ligase; FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 3343 Blast hits to 3310 proteins in 864 species: Archae - 299; Bacteria - 1362; Metazoa - 364; Fungi - 424; Plants - 106; Viruses - 161; Other Eukaryotes - 627 (source: NCBI BLink).
Link
InterPro Scan - TAIR