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11-1640-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 523897 [Map]; Strand: c
      • AT1G02520.1 - [+] show detail - P-glycoprotein 11
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 11-1640-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCCCTTA GGAAACATTT CAATCCAGTC CAAAAAAAAA 
    CCACTTGTGA TTTGTCCTTT ATGTTAAATT GCAATCTAAA GAGTTCCCAG 
    AAATAATCAC CAATAAAACA GAGTCTGTTA AGGGAAAGAG TCACATGCCT 
    TTTTGCTTGC CCGTAAAATC AGAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14823018 [Map]; Strand: c
      • AT2G35160.1 - [+] show detail - SU(VAR)3-9 homolog 5
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 11-1640-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    CGACTCACAT ATCTCCCGCT CCGGCCAATC GACTCGTCAT CTCCGCCATT 
    ATCACTACTC CTTCCTTCAT TTCTGGTAAA TCTTTGTACC CTTCTTCTCT 
    ATTCTTCATT CTTTTATTTT TTGTTACTTG TAGACTCGAA ATTGATCTTA 
    TCAATCGCTT CCATCTCTCG ATTGATTAAC AATTTTAAAA GTTGATAATT 
    TCGAGATTTG GAGTCTGTTT CTGGAAAATG TGGATAAGGA TTTCTTATGA 
    TTCATGGATT AATGCGTACT GATTCGTTCA CATGTTACTC AAAACTGTAT 
    CATGGGTTTT GAAGATC

AT1G02520.1

Model type
Protein coding
Short Description
P-glycoprotein 11
Computational Description
P-glycoprotein 11 (PGP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1); Has 844961 Blast hits to 391444 proteins in 4162 species: Archae - 14749; Bacteria - 659839; Metazoa - 18308; Fungi - 13140; Plants - 9783; Viruses - 35; Other Eukaryotes - 129107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35160.1

Model type
Protein coding
Short Description
SU(VAR)3-9 homolog 5
Curator Summary
Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.
Computational Description
SU(VAR)3-9 homolog 5 (SUVH5); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: maintenance of DNA methylation, histone methylation, regulation of gene expression, epigenetic, response to chitin, chromatin silencing by small RNA; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 6 (TAIR:AT2G22740.1); Has 5295 Blast hits to 5101 proteins in 461 species: Archae - 0; Bacteria - 388; Metazoa - 2414; Fungi - 548; Plants - 1120; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).
Link
InterPro Scan - TAIR