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11-1660-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2257669 [Map]; Strand: c
      • AT2G05900.1 - [+] show detail - SET domain protein 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1660-1 - 5-prime edge 
    CTGCCAAAAC ACAGTTGGGT GAGCAACTAT GGTTCATAAA TCGAGCCACA 
    TTACCTGACT TCTTTGCACT AATCACCAAT GACGATGACA CACTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2257785 [Map]; Strand: c
      • AT2G05900.1 - [+] show detail - SET domain protein 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1660-1 - 3-prime edge 
    TTTGGCAGTC TATTGCTCGT GAACAAAATG GTTTATGGTG TCTTTACATT 
    GGCTTTTTTG CAATGAAACA TATTCCTCCA TTAACGGAGT TGAGATATGA 
    TTATGGAAAA TCTAGAGGTG GTGGGAAGAA GATGTGTCTA TGTAGAACGA 
    AGAAATGTTG TGGTTCATTT GGATAATGAT TTTGTATTAT AATTGAGTGT 
    TTGTTAGAAT TTTTCGCTTG CTCTATAATC TTGTAGTCCA TTCGTTTTAT 
    AAATAAACTC AGTTTAAATA AATTGATTAG TCTCTATGGT CATTAATTAA 
    TTTCGTAAAA TCAACAATAA AAAAATCACT AGTTCAAAAA CATAACCACT 
    ACGGTTCACT TAATATAGAA ATGAATTGAT TACTGTTTAA CTTTCTATTG 
    AAGTCTATTA GTGTGTAGAG GAATAGATAA GTTAGTTATT TTGTTGCAAA 
    TTTTTCTCAT CTTAATGCTC ATTTTAAATT TCATGCTTCT CGTGTTTGAT 
    TAGGTCTAAT CATTTTCAAA GAGAAATTCT ATCATTCATT GCTAAAGAGC 
    CAAAGTCATA TATGTTTAAC TTTCATTTTT ACTTGAATAC TTTAAACGAC 
    CGTACAAATT GGAGAGTCCT TTGATAACTA GTATAANTTT ANTTAATATG 
    CACATAAGTA AGAGTTGCTC GGCATCTNTN TCCACCNGTN ACATAGTTAA 
    TTAATTAACT AATTTN

AT2G05900.1

Model type
Protein coding
Short Description
SET domain protein 11
Curator Summary
Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.
Computational Description
SET domain protein 11 (SDG11); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 2906 Blast hits to 2667 proteins in 280 species: Archae - 0; Bacteria - 89; Metazoa - 1281; Fungi - 322; Plants - 960; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR