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11-1672-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22103190 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-1672-1 - 5-prime edge 
    CTTGGCATTC GATAAGATGA GGTATATGGC AGTGGTGAAT GCATAGCTCC 
    AGTACGATTT TGGCATACGG GCTTGTCCAA GAAGTGTAAG ACCAGTCTCT 
    ACTATATGAC GGTGCNTTCC TTTCGGAGAT GCCGTTGTGC TCAGGCGTGT 
    GAGGTGGCGT TGTTAAATGA GTGATTCCAT TGGAGGAGAG GAAGGAGCGT 
    AGAGCAATGA ACTCGCCACC ATTGTCCGAG TAGAGATGGA TGATTTTGCG 
    TTGAAATTTG TTTTCCACCA GGGCCTTGAA GGTCATGAAC ACATCTTTAA 
    CATGGGACTT TTGCTTGATC GGATAGAACC ATGAGTATCT TGTATAGTGA 
    TCTACAATAA CAAGATAGTA TTTGAAGTTG TCAATGGACA CTATTGGTGA 
    TGTCCAAAGA TCAGTGTATA GATATTCAAG TGGTTGAGTA GAGGTAATAG 
    TGTTTGTATG AAAGGGAAGT TTGTGTGTTT TATTCAAAAG GCAATCAGAA 
    CAATGGAACT GTTTTTGCNA AAGAATGAGA AACAGGAAGG GAAAATTGAG 
    AAACAACACT TTTTAAAGTA NATAAAGACG GGGTGGCCAA GACNTGAATG 
    CCATGAGGTG ANATCGGTTT TTTGGAGNGG TTGNAANGAN GNNGGGATGA 
    CNGNTNANGN AGNATTNACT GNCCTTCNTA CANCNTNGNT NTTANNCCTN 
    CCTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22103075 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-1672-1 - 3-prime edge 
    ATGCCAAGTG ATGTCATTGG TGGCATTTCT CCATACAAGC GGCTCTTTGG 
    TCAAAACCCC AACTACCTCA AACTTCGGGT GTTTGGGTGC CTCTGTTTCC 
    CGTGGCTTCG ACCGTATACT ACAAACAAGC T

AT1G60020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)
Link
InterPro Scan - TAIR