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11-1727-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29343309 [Map]; Strand: w
      • AT1G78030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unkno...
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 11-1727-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CAGCCATGAA CGGAGAAAAG TCACCACCGA 
    TTACGATGAC GTTTCTAAAT GATAATGGTT TCTCACATTG TTTTTTTTTT 
    CGGTTNGGGT NACATATTTT CATTATCCCA AACCACCTTT NGTNTTCAAT 
    GGNNTNTTNG TNGCANGTTT NAANANCNNA TCTCNATAAN GGGGTCTTNG 
    TNGCAAATNG TNTCAGTCAC CAAACNACNC AGCGCCCAAA GCNGATANAA 
    AACAAGNGAT NGGGGNNAAA NAGNGGGGGG AAACTTATGT TCNGGCANAG 
    TNTAANCCTN TNTNTGTTCA TCANCTCGTC CTNGTCCTNG CAACNGCTNT 
    NCAGCNGGGA TNGGGTNTGA CATTGAAGGA NGTNGANTTT GAAGGAANAT 
    TAAANGGAAN CTNGGGGANG TTTNNAATCT NGNTGGGNNC TNCNTNTAAA 
    ATTNTNATTN TGTAAAGCCT TANGGGTAAT CAAATGNTAA ACTTTTTCCT 
    TTATNCAANA AAGGATTGGN ATNAANAANA TTTTNCTAGN NCCAAAACCN 
    GAAAAAAAAA NTNTGGGAAC AGGTAAGGGG GGNNNAAACC ANAAAGGNGG 
    GGCCGCNGNN NAATNNATTT NAACAAAGGC NGAACNAAAN CTTTTNANNA 
    NATGCCACNC TGGGGGGCNC NNTTNGGAGA CNNNNGNGAA ANAAAAANNA 
    NCNGGGGNGG GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29342362 [Map]; Strand: w
      • AT1G78030.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unkno...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1727-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACTGGCTA TTATTAGAGA AACGTAGAGA 
    TCGAGTAAAC GCAAATCCTA AATCTAGTTG AACTCAAATC ACATTAAATC 
    TCAAAGCCCA ATAACGGCCC ACTTACAAAA CGGTAGCGTA ATCACTCGGA 
    CTCTTAAGTT GAGGAAGATA TGAGTTTGAT AGAGCTCATA GAATGGATAA 
    ATCACAATGT TAAAAATACT TTCATATCTT TCAATAGTGA AAGCATATTT 
    GAAATCATCC CACTCCACTC CTATCAAATC GCACTGTTAT CTTATCTAAA 
    GACAAACTAT AATACGAATC CTAAAACTAT AGTGCTTTGT GTGGTTGTAA 
    AATAAAATGG AGTTCTTATT CATGCATTAT ACCAAAAAAC AAAATGTGAG 
    GGACTTTATA CCTAAGCAAG TGGGGAGTTA TGAAAGTATA ATATCTAAAT 
    CAGATCAAGA ATAAAAATAA TTGAGATACC AATTGAGTAT GTTTTGTTTT 
    ATGTACACTC TTAATAAACA TACGTGAGAT TATTGTTAAA GTCCAAACTA 
    AGAATTAAAT GAACAATTTA GAAAGCTATA TGATTCGGAC CCTCGCATGA 
    GCTGTTCCCA CTTGTCTTTG CTTAATTTGG ATGGAACATT TCGATCCGTA 
    ATTCATAAAA CGGGCCGACA CTACTGAAAT CTCTAAATAA ATAATGTAAG 
    ATCAAAAAAA AAACTAANTN CANNTTTGAC TTAANGGCGA AATAACCTGC 
    GTGNGGGNTT NTTTNATNGG

AT1G78030.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR