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11-1757-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5485166 [Map]; Strand: w
      • AT5G16715.1 - [+] show detail - ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP...
        Distance: -187; Region: promoter
    Flanking Genome Sequence: 11-1757-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC AGAGCAATTA GACGACCATT GAAAGAACAA TAATTACGGA 
    ATTACCCTTC CCGTCATCCA TTCCTTCCCT CCTCCGCCTT AAACCCCTAC 
    CATTTTGTGT CACTAGCAGC TTATCTTTAT TTTCCTGGGA ATTTCAAATT 
    CTTTTCTCGC CCCAGATTTT CTCGGGAATC TCTGTCGGGC GTTTTCTTCA 
    GAATCTGCCA TGATTCTCAA AACGGCTTTT TCTCTACCCA CACCTACTAC 
    TACTCTATTA TCTCCCAGCT CTCCTCACCA GCTCAACACT CTGTTCTTCA 
    CTCGCCGACG CCGTCGATTA ATTTCCCCAT CCCGCTTGAA CTCAATTTTC 
    TCGCAACGTA GATTCTCTTT CTCTGGTACG TTCCTCGCTA TTTCTTTTCT 
    CCAGTGTCGA ATT

AT5G16715.1

Model type
Protein coding
Short Description
ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
Computational Description
embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia, tRNA-binding arm (InterPro:IPR019499), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 40467 Blast hits to 37894 proteins in 3157 species: Archae - 953; Bacteria - 21019; Metazoa - 839; Fungi - 772; Plants - 400; Viruses - 0; Other Eukaryotes - 16484 (source: NCBI BLink).
Link
InterPro Scan - TAIR