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11-1760-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13915716 [Map]; Strand: w
      • AT4G27950.1 - [+] show detail - cytokinin response factor 4
        Distance: -4857; Region: intergenic
      • AT4G27960.1 - [+] show detail - ubiquitin conjugating enzyme 9
        Distance: 104; Region: intergenic
    Flanking Genome Sequence: 11-1760-1 - 5-prime edge 
    GTTCCAGATG GATCACAATC ACAATCTTAA CTCATGAACA ACTTCACTCT 
    TAGGCCCCAT ACACCATTTA CATAAATCAT TGCCCACATA ATACTAAAAT 
    GAAAATGTTA CAGTATGTAA GTTAATAATG TTTACGAAAA CNGGAAAGGC 
    TTACGATTGT AGCTAGTTTG GGCTTTGGAC AGAATAAAAT CCAAAATAAT 
    ATGAGCCTTG ATAAACACAG AGACGCATCG GCATCACGCA ATAAAGAAAC 
    AGCAGACGGG ATGATGATTA ACGTTTTACA GTTCCATAGA ATGGAGATCA 
    AATAATTTCT TACTGATCCT GTCTTCACAA ATTTTATAAG ACAGACAAGT 
    CTATAAAAGA TCATTACATA GAAATAAGAA GAGTTTAATT ATTAGGGCTC 
    TTCCTTAAGG ACAGTATTTG TGTCAGCCCA TGGCATACTT TTGGGTCCAG 
    GTCCGAGCAG TGGACTCGTA CTTGTTCTTG TCTGTCTTGT ACATGTGAGC 
    TATCTCAGGG ACCAAAGGAT CATCTGGGTT TGGATC

AT4G27950.1

Model type
Protein coding
Short Description
cytokinin response factor 4
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
cytokinin response factor 4 (CRF4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 3 (TAIR:AT5G53290.1); Has 6110 Blast hits to 5757 proteins in 250 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6087; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27960.1

Model type
Protein coding
Short Description
ubiquitin conjugating enzyme 9
Curator Summary
ubiquitin conjugating enzyme
Computational Description
ubiquitin conjugating enzyme 9 (UBC9); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 10 (TAIR:AT5G53300.4); Has 10699 Blast hits to 10660 proteins in 400 species: Archae - 0; Bacteria - 4; Metazoa - 4650; Fungi - 2335; Plants - 1940; Viruses - 26; Other Eukaryotes - 1744 (source: NCBI BLink).
Link
InterPro Scan - TAIR