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11-1780-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15226859 [Map]; Strand: c
      • AT2G36310.1 - [+] show detail - uridine-ribohydrolase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-1780-1 - 5-prime edge 
    ACTTCAAGGT TTCATTACCA AGATTATGCA GGACATTGAC GGAGTCTTCA 
    ATTCAGCTAA CGCCAAGGGC AATTCGTCGT CTTCTTTCCA TATATCTTGT 
    TTATTATTTC ATAACTAATC CACCTTCGAT TCTGCTTTTT TATATAAAGT 
    TGAGGTTTTT GAGCTATTTT TTCTCCTAAA GGATTCCGAA AAAAAGCTTA 
    GACCTTTTTG ATCTGATACG TATCTATAAA TCTGGAAAGG AGCNTGAGAG 
    TTTCAAGGGG TTTTAATTTC GCTGAGAAAA CGTTTAATTA TCTTTGTCGA 
    GATGGATTGT GGTATGGAGA ATTGTAATGG TGGGATCTCA AACGGTGACG 
    TTTTGGGTAA GCATGAGAAG CTCATTATCG ATACAGACCC AGGAATTGGT 
    GAGCTTCTTC TTCCCCTGTT TTGATTACGT CTTTTAGTAA ATGGATCTTC 
    AGGCAGAGTA GGATTTAACC TCAGAAAGCT TCCAACTTTG TTTAATTTGA 
    ATAGAAATAT TTAGATGGTT ATCTCTTGAA TCTGTTTTTG TGTGCTCATT 
    TACTTGTAAA GTTCAATGCT TTGCTTAATA GAAAGATTCA GGGGAAATTG 
    TTCTTTTTTG TGTGTNGACT TTTTTCCAAA TGACTGTNCA ATAGGATCAG 
    TTCTAACATT AGTGTATGAT TAGATGATAG CATGGCGATA TTGATGGCGT 
    TTCAAACACC GGAGCTGGAG ATATTAGGAT A

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 336853 [Map]; Strand: c
      • AT1G01960.1 - [+] show detail - SEC7-like guanine nucleotide exchange family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1780-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGAACAGAC TGCGTCGTAG ATGGGTCTGA TTCGGATTTG TCCATGGGCT 
    CCATCAGCTC GGCCACGACG ATGGGCTGAA TGGGGACGGT GGATGAATCT 
    GCCTCCATTC TTCTGAACAC GATAACAGAC ATCTGCACGA GCGAGGCTTT 
    AGCAGTCGCC TGATTAACCA CGTTTCTGCT TCCCAAGTAG ATACCATAAC 
    AAGTCCTGAC GATCTGTAGC AAAGAATCTC CATGGATCCT CAGGGAAATT 
    GAAGTTACCG CAGTCAAGAG CGTCTTCAGC ACGAGCAACT CGA

AT1G01960.1

Model type
Protein coding
Short Description
SEC7-like guanine nucleotide exchange family protein
Computational Description
embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G36310.1

Model type
Protein coding
Short Description
uridine-ribohydrolase 1
Computational Description
uridine-ribohydrolase 1 (URH1); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 2 (TAIR:AT1G05620.1); Has 6361 Blast hits to 6297 proteins in 1364 species: Archae - 75; Bacteria - 4675; Metazoa - 179; Fungi - 233; Plants - 187; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink).
Link
InterPro Scan - TAIR