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11-1783-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8418066 [Map]; Strand: w
      • AT1G23810.1 - [+] show detail - Paired amphipathic helix (PAH2) superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-1783-1 - 5-prime edge 
    CTCGCAGGTA TGTATTAGTT CTTTTCTCCA TGTTATGTTT GATTTTCTCA 
    GTCTACAGAA CAAACACATT ATGTAAATTG ATTCTGATCT TACTAAGTCT 
    CTTTGTAGAG TCAATGCCGC TAGTGTCATT GCTAGGGTGG AGGAACTCAT 
    GAAAGATCAC TCGAATCTGC TTTTTGGTTT CTGTGTCTTC CTTTCAGCTA 
    CAACGAGTTT TACCACGAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8417950 [Map]; Strand: w
      • AT1G23810.1 - [+] show detail - Paired amphipathic helix (PAH2) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1783-1 - 3-prime edge 
    CCTGCGAGCT TTAAAATCAT TCAAGAGCTT AAGCATTTCC TCATATTTTG 
    CAGGTTCATC ATGAAATGCT TCCTTCACAG CAATGAGGTA TGAAGTCGCA 
    TCATCTATGG TAGGCTCCGG ACGTGGTACG CNTTCTTCCA ACCACCTTAT 
    GAAACTCTTC GCTAGCCTCG GGAGGGATGG CTCTCTGATA CTCAGGTGCA 
    AGCATGACAT TTAAACCAAG ACACAGACTC GGGTGATCTT TCAAGAGGTC 
    CTGCATGCGT GCACTGAAAG TAGCCATACC CATCCTACAA AGATAAAAAT 
    AACATTAGAA TCAATTCTCA CATGTGTCTT TGTTCTTTAG ACTGTTTAAG 
    AGCAAACCAA ACACACCTTC GCGCTATCAC CTCATGAAAG AGTCTTAGAA 
    ACTCTTGATA TTTTGCAGGT TCCGCTTCCT CCAATGCGAC CTTCACAGCA 
    TTGACGTATG CCTTTCCATC TTCCAAAGAT GACGCCGGTG ATTTACTTCC 
    TCCAGCCATG GTGTGAAATC GACCTAATCC ATTGTTCAAA GATAAAGATT 
    TGTGTTCATC AAAACAGATC AGATTGATCA TTGAAGCCTT TCTTGTATCT 
    CAAGAAACTT AATCCATAAC AACAACAAGA TCAGTTCGTC GATATGGATG 
    ATTCATGCAA AGTTCATCTT CTAGAATACA GATTCATGTA AATTTCATCG 
    AACAAGATCC TT

AT1G23810.1

Model type
Protein coding
Short Description
Paired amphipathic helix (PAH2) superfamily protein
Computational Description
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G24250.1); Has 824 Blast hits to 569 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 300; Fungi - 147; Plants - 338; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR