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11-1795-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28394708 [Map]; Strand: c
      • AT1G75610.1 - [+] show detail - pseudogene, histone H3, identical to histone H3.2 from Medicago sativa GB:AAB...
        Distance: 1396; Region: intergenic
      • AT1G75620.1 - [+] show detail - glyoxal oxidase-related protein
        Distance: 71; Region: intergenic
    Flanking Genome Sequence: 11-1795-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGCCCACGT CCTCGCGTAA TAAACAAATT CGAGATTTCG TATCTCTTTA 
    AAGTATCTAA ATAATATGAA TTTCACCGAC TCGGAGAAAT ACCAAAGTAT 
    CTGATTCCTT ATAATAATTG AATACTAACA TACAATTCTA CGAAATCAAT 
    TTATAAAAAA AGTCTTCAAC AATATTTATG TTTAAATAAA AAAAAANCCA 
    ATTANCNCAT NTAGTAAGNG AANGACCAAN GTNGANGAAT CACCTTTCNC 
    NGNAAACGTN CCCAAAGACC TTCNCNGGGT NTNTCTNGGT TTACAACNAA 
    ANCCATGTAA TANCCGGGGG GGGCAANAAT CGCAAAGCTN GGAGNCCTAA 
    CTNTAACTTC ATAAATCTNG CTAATCCCGA GTTTAAAANA AANGACNTGA 
    TCAANANCCA AAANCCTTTG ANGCNTCGAN AAANAANGNG TAGTAAACNA 
    AGGAAATAAC ATCGNAACTT TAACCGGACT TTTNACTNTT CCGCTCACAA 
    TAAACCTAAN CCTCAANACT NTNCCGTAGT TNACCGTNGT NTGGGGCCTA 
    GGATN

AT1G75610.1

Model type
Pseudogene
Computational Description
pseudogene, histone H3, identical to histone H3.2 from Medicago sativa GB:AAB36495 GI:488571, Histone H3.2, minor Lolium temulentum SP|P11105, histone H3 Tortula ruralis GI:4574208; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4; blastp match of 96% identity and 6.6e-54 P-value to GP|6006364|dbj|BAA84794.1||AP000559 EST D15300(C0425) corresponds to a region of the predicted gene.~Similar to histone H3 (AB015760) {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT1G75620.1

Model type
Protein coding
Short Description
glyoxal oxidase-related protein
Computational Description
glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G19900.1); Has 839 Blast hits to 834 proteins in 169 species: Archae - 0; Bacteria - 315; Metazoa - 0; Fungi - 239; Plants - 267; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR