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11-1812-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26444290 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: -796; Region: promoter
      • AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: -796; Region: promoter
    Flanking Genome Sequence: 11-1812-1 - 3-prime edge 
    GGGATACGTG AAGTATGGAA CCGAAGCTAA AGTGGTTCCG GGGAAACTAA 
    ATGTTCATCT TGTTCCGCAT TCGCATGACG ATGTCGGCTG GTTGAAAACT 
    GTTGATCAGT ACTACGTAGG ATCTAACAAC AGAATCCAGG TATGTTATCT 
    ACAGATGAAT GATGAATCAT ATATATGTAT GTATGTAGAG ACGAGTCTAA 
    CATACTATAT ATCCCAAATG AATCGTGAGT TTCAGAACGC TTGCGTGAGG 
    AACGTCCTAG ACTCGGTGGT GGATTCTCTA CTTCGTGATC CCAATAGAAA 
    GTTTGTGTTT GCGGAAATGG TAAAACATTA ATAATGGTTT TGTTCATAAA 
    ACCATAATAT ATGTTTTCTT CTCTTATGTG AACATCAATG TACATGAAAA 
    AGGCCTTCTT TACGCGTTGG TGGGAAGAAC AAAGCCCCGA GAGACAAGAG 
    CAAGTGAGGA GACTAGTGAA ATCCGGGCAA CTAGAGTTTG TGTAAGTAGG 
    TCACGACCTT AATTTGATCA TTTTGGCTAC GTAGTGATGA TACAATTCAC 
    ACAATCAATG TGCANAAATG GAGGATGGGC TATGAATGAT GAAGCAACGT 
    GCCATTACAT AGATNTGATA GACCAAACCA CAAAGGGGCA TCGGTTTATA 
    AAGCAACAAT TCAACACAAC TCCNCGTGCT GNTTG

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.1

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.2

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR