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11-1839-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2321190 [Map]; Strand: w
      • AT1G07540.1 - [+] show detail - TRF-like 2
        Distance: -142; Region: promoter
    Flanking Genome Sequence: 11-1839-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    TGAGATTTTC TTGCAACGTA AGAAATTTTA TAGATAAATG CTAATACATT 
    GTTGGACTCA GTAACCTAAT TGTTTTTCTC CAGGGATCTT GTAATCCGTG 
    AGAATGCCTT CGTTTTGTTG AATGATTGAA ATGTTCTTCA AATCATGGTG 
    TTGCAAAAGA GGCCCGATTA TGGATTCAAT GGCTATGAGG TGCCTCACAC 
    ACCTCGAGCT GCCAGATCAC CAAGAGTAAA TACAATTCTT AACTTTTTTG 
    TGTGTTTCTT ATCAGTTTTA TATATGTTCT AATGTTCCCT TCTGATATAT 
    ATGTTTGTGT TTTGTGTTTT GCTAGAAGAG TGCTTTCAAG AAGAAAAGCG 
    AAAACCATCA AATATCGTCT TTCGATTTGT TGGCTGCAGT AGCTGGAAAA 
    CTGCTGCTTG AAGGTGGGAA TT

AT1G07540.1

Model type
Protein coding
Short Description
TRF-like 2
Curator Summary
Arabidopsis thaliana telomere-binding protein, putative (At1g07540)
Computational Description
TRF-like 2 (TRFL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 1 (TAIR:AT3G46590.2); Has 350 Blast hits to 338 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 309; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR