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11-1850-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30198137 [Map]; Strand: c
      • AT1G80325.1 - [+] show detail - other RNA
        Distance: -204; Region: promoter
      • AT1G80325.2 - [+] show detail - other RNA
        Distance: -63; Region: promoter
      • AT1G80330.1 - [+] show detail - gibberellin 3-oxidase 4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1850-1 - 5-prime edge 
    TGTGCAAATC GCACCTATCT CTAAGTTAAC CGGTCCGGCT GAACCGTCTC 
    TATACCGGTC AATTACATGG AAAGAGTATC TCCAAATAAA GTATGAGGTT 
    TTCGACAAGG CCATGGACGC AATTAGGGTC GTTAATCCCA CCAATTAAAT 
    CTCCTTCTCA AATACTCTCT TAATGAAAAA CCTAAATTAA ATGCGAATCT 
    TGTATTATTA TTACAAAAAC TGAAAAAGAG TTGTATTATA GATTAAACAC 
    ATGATGATGA CCAAATTTAA CATACACAAT CTCGCCGTCG ATTTATCTAA 
    TTACGGCGGC GATTAGGGTG TGACGCCGCA GTAGATCTGG AGAAGATCTT 
    CGCTGGATTT CTTGAGAGAA TTGATGTACG ATTCGTAGAA GCGTAAGAGG 
    CCGTCGAGCN CGNAGGGGAT TGTAGCGGAG GGGATGTTGG TCATCGACGA 
    GCTCCTCCGG CGTACGGATC GTTCCTTTGT GGAAGGAGAA AAACCCTAAA 
    GAGTATCGAA TCTCATCTGC ACTCATCACT ACCTTGNGGT AACATGCCTT 
    TATCCTATCG NTACTNCACG CCTTNNTNAC CANCAAAAAG ATTNNACATT 
    NATTGNTATG NNTAGGNGTT NNNACTAATN NGATTNGGNT NANAGCTCCC 
    NNGAGACCCN TGCCGGANAN AACNACNAAN NTNGNNGGGG NCGGGNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30198250 [Map]; Strand: c
      • AT1G80325.1 - [+] show detail - other RNA
        Distance: -317; Region: promoter
      • AT1G80325.2 - [+] show detail - other RNA
        Distance: -176; Region: promoter
      • AT1G80330.1 - [+] show detail - gibberellin 3-oxidase 4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-1850-1 - 3-prime edge 
    TAAATTGCAC ATCACCAGCT GGACCACCCC ATAAGTACGC AATCGAAATT 
    CTTGACCGAG TATGGTTAAC TTTGGCTCGG TGAACCACGC TTGGGATTTT 
    CCCGTTCGAT AAGATGTGAA AGAGATCACC CATGTTGACC ACNGAGGACA 
    CCAGGAGCCG GCTCAACCGT GACCCAACCG GACTCTTCCC TGAACACTTG 
    TAGCCCTCCC GTGTTGCTCT GGTGCAGAAT GGTTAGGATA GTGGAGTCTG 
    TATGAGCGGC TAGACCCATG GCTCGTTCTG GTTCAGGACA AACCGGGTAG 
    TGGTTTAGTC GTATGGCGCC TCTGCCCACT TTTGATCCAG ATTTCTCTAG 
    CTTGTGAGCC CATTCAATGT CTTCCACGGT GACACCAAGT GAGCCTAATA 
    TGCAATACAG AAGTCTGCTT GCTAATTTTT CCATTTCGTC CACGTATTCT 
    TGGATTATAC CGCTGCACAA TACCAAAAAT GAAAAGCAAA TACAATTTAC 
    AGTAATTAAG GTTTTTGGTA ATCTAATGTT AAGACCTCGA CATAAGCCAA 
    ATTATCACAT TTCATAGAGA CTTTGGTACT TTAATTTGCT GTAATATGCA 
    ATAAGAAGTA CTACTTCATA AAATATAAGG ATGTTGCTCG AACTATTTAA 
    TTAGAAACTT TGAAGGCTAC ACTCTATGTG TTATCAGNTT ATCACTAATC 
    ATAAACATCA AT

AT1G80325.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G80320
Link
InterPro Scan - TAIR

AT1G80325.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G80320
Link
InterPro Scan - TAIR

AT1G80330.1

Model type
Protein coding
Short Description
gibberellin 3-oxidase 4
Curator Summary
Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.
Computational Description
gibberellin 3-oxidase 4 (GA3OX4); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 3-oxidase 1 (TAIR:AT1G15550.1); Has 8413 Blast hits to 8377 proteins in 994 species: Archae - 0; Bacteria - 1114; Metazoa - 109; Fungi - 995; Plants - 4899; Viruses - 0; Other Eukaryotes - 1296 (source: NCBI BLink).
Link
InterPro Scan - TAIR