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11-1881-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 427166 [Map]; Strand: c
      • AT5G02160.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (3UTR)
      • AT5G02170.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: -667; Region: promoter
      • AT5G02170.2 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: -667; Region: promoter
    Flanking Genome Sequence: 11-1881-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACGT ATATAATATA 
    CAATTGCTTT TTTATGTGTA AGTTTCTTTG CTTTCTTGTT CTGTAAGAAA 
    TTGTCTGGGT ATTATTGTAA GTTTTTAAGC AGTTATAGAC GAAGGTGCTC 
    AGCTACCAAA ATAAAACGAA CAAAAAATAA ATTTAACNTG CNTGCATAAG 
    TAATTAGAGA TGAACATTTA ATGGCCAATT AATGACCCAA CTGTCATTGG 
    CTTCTTACAT CACATGCATA TCACCTAATC TTCATTACGT GTTTATTTCT 
    GTGTTTTATA AATAACCTCG CCAGAAACGT TTTTATATTT TTTCAAGCAA 
    ATAGTATTAT TGTATAAAAA CTAATTTTTT TGTAAATGAA CCTTACGCGT 
    CAGAGTAGAA GATTCTTTGA ATTGTTCTTG AAGTTTCTTA NATTTAGTAG 
    TGATTGGATA ATGGGACATT ATTAAATTTA TCTTATTGGT GGAATAATGG 
    GAAAATCGTG AATTTGTTCA TTAATACATT TAAATTATGG GGAAAAATTC 
    AGGGAGACAT CATCATAGGT AAGGAGACTG CTAATTAAAG AATATAAAGA 
    AACGTGACAA TAATTTAGAA CTTGAAAACA NAACACGTTT CGTTGCGTCC 
    CCTAGTTGCT TCTTCTCAAT CTTCTTCTTC TTCTTTTTAN ACCTTTTGTT 
    GGTTTTTGAA ACAGAGCNCA GTNNAAGAAT ACAAACAAAG TNNATGAAGC 
    AAAACGAGAC ATTCNATCAA NAAAGGGA

AT5G02160.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02170.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Computational Description
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02170.2

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Computational Description
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G02180.1).
Link
InterPro Scan - TAIR