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11-1891-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22877489 [Map]; Strand: c
      • AT3G61800.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR...
        Distance: -643; Region: promoter
      • AT3G61810.1 - [+] show detail - Glycosyl hydrolase family 17 protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-1891-1 - 3-prime edge 
    TTCACGAGAA CATCGAATCT TTTTAACTCT CAATGACTTT TTTTTGTTTG 
    TTTTTCCAGG TCCAGTGATC GGAATCAACT ATGGTCGTTA CGGCTCAAAC 
    CTACCACCAC CAGAAGCAAT ACCATCGCTA GTCAACTCTC TCTCCATCAA 
    ACATGTCAAA ACCTTTGACT TGGATC

AT3G61800.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 308 Blast hits to 279 proteins in 95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi - 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61810.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 17 protein
Computational Description
Glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G29360.1); Has 2169 Blast hits to 2156 proteins in 157 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 56; Plants - 2095; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR