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11-1895-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23400219 [Map]; Strand: c
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-1895-1 - 5-prime edge 
    CCTCTGACCC ATCAAGAAAC CTTCATTCAT AAACTCCCAT CTCTCTGCCT 
    CGATCTTTCT GAATCCCTGC AGATAAATAA GTAATCGAAT ATCATAATAT 
    AAGTTTTTTT TTGGTTTGCG ACCGTAAACA TGTTATATAT AACAGACGAA 
    GAACCTGCCA CTCTACTGCG CTGTAAAAGG AAAGCAACAT TATCTTCAAT 
    TTTATATTTT GTTGGATGGA ATAATTGAAT ATTTTATTGC AGGTTGATAT 
    GGATAAAAGT TTCCANAACT TTTTTATTTT GATATAAATA AAGGTTTCCA 
    NAACTTGCGA ANAAACTTCT TCTCTTTCAC TACTAGCTAG CTTGTTTCAC 
    CAGCCATTAT TATTATTGAG CATAATTACT TAGTACTAAA CTATCCAGNG 
    AACAAGTAAT TCACAAATAG ACACATTGTT TAACCTTTTG CAGTAATTAA 
    AGGCCGAAGG CATTGTTGAG TTCCTCCAAG ACATAAGATT AAGGGAACAC 
    TATAGTGAAA AAAAAAACAA AAAATCCNNN ANGGGCNTTT AGNGGAAAAA 
    CAAAAATNCT CCNATAAGNG TNAANTTGNN TGACAAAACT GGAAAAATTN 
    GTNGNCTTGA ANTTTAAAGG NNAAANNNNG GCCCAAAAGG AATGGGGNTN 
    ANNANCCNGG GCNGNNNACC ACCGGNNCCN TNNA

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR