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Mutant Lines
11-1909-1

11-1909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 907137 [Map]; Strand: w
- AT1G03620.1 - [+] show detail - ELMO/CED-12 family protein
  Distance: -951; Region: promoter
- AT1G03630.1 - [+] show detail - protochlorophyllide oxidoreductase C
  Distance: -505; Region: promoter
- AT1G03630.2 - [+] show detail - protochlorophyllide oxidoreductase C
  Distance: -514; Region: promoter

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCTA GGCATATGAA CAAGACAATG GAGGAGGAGG 
AGGAGATGGT CTAGAAACCG TGACGACGGA GGAGGAAAAG AAAAGAGATG 
AAGTAGAAGA AGAAAATAAA ATAAAATAGA GGCAAAAATG GAAATTTTCA 
TTGGAATTTT GCAACTTTTA GAAATTGTAG AAGATGAAGA GAGCTGTGTG 
ATCCAAAAGT GTTTTTTTTT CTCTCTCTTT TTTCGTTTTT GTTTTCTTTC 
TCCCACCTCT CCATTGACCG TTAAGTTGCC GCCTTCTTCT NTCTTCCACC 
AAATTGTTCT TGACACATTT GGACGGTCCA NATTCATTAC AGTTCACCTA 
TCAACGGTGA TCANATCAGT TGANAGTTAA CAAAACANTN TTAAAGCCCN 
TCTCANGGCC CANTAAACGA NAGATGAANA ATCTGAANCT AGTGATCTGA 
TTGGTTGAGG GAAAAAGCTG TANCCTGGAA NACACNTGTC ACTANCCCAA 
AACTACCTTA TCTTCNGTCG CTCCTCAATT CGGGGAAAAT CGAAAACACT 
GTGACACTCT AGCACCTTCA GTTCCGTACA ACAATGGCTC TCCAAGCTGC 
CTATTCTCTT CTTCCTTCTA CCATTTCAAT CCAAAAAGAG GTNTGTTTTC 
ACCATTAGTA ATGATTTCCA TCTTGTTATG ATTNGTTTTC NATAAAATGA 
AAAATTTACC TCATGCAATG GNGATTTTNC NGGGCAA

3 prime edge [+] show sequence

Chromosome: 1; Position: 907123 [Map]; Strand: w
- AT1G03620.1 - [+] show detail - ELMO/CED-12 family protein
  Distance: -937; Region: promoter
- AT1G03630.1 - [+] show detail - protochlorophyllide oxidoreductase C
  Distance: -519; Region: promoter
- AT1G03630.2 - [+] show detail - protochlorophyllide oxidoreductase C
  Distance: -528; Region: promoter

GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCGT 
AACTTTTTCC CCCCTCATCT TTTTAATCAA TCATAACGAT TTTTGCTTGT 
GAAATTTGAT TTGATCATCA TTGTTTGCTA ATTATATTTT CAAGGGTAAT 
TTCATTGTAA AGTTTTAAAC TTTACATAAA AGTTATGAAA AGAAAACATC 
CTTTAATTGC GCTATTATGT TAGCTACAAC TTTTAGAGAA ACCTTTTTGA 
GCCCAATTAT ACCAAAATTT GACTAAGTGA AAATGGAAAT GATGATGGAA 
CTTTTGAATA TTTAGAAATC GAATTAGAAC TTTAGCTCAT TTATATTTAG 
TCATTTTGAT TCTATCATCT TCTTGTCATT CTCTAAATTA ACTCAAAGGA 
GTAAATAAAA ATACAAATAC AAAATTTATA CAGAACAACC CACAATTCTG 
TCTAGTTTAG TTAAACGTGT TAAAATAGTC ACGCAATGCT TTTTCTATTT 
TTAAAAATTA ATAAGCTCTG ACCTGTACGC AACCAAATAA AACACTAAAA 
CTTATCTGTG ATCAACTTAG CTCTGTATAA AAATCTTCCT CCTCTTTCTT 
TCTGTCCAAT TCTCTACAGA GAAGTCTTAG CTTTTGCAAA ATCATTAACT 
AATCTCTGTT TTGATGACTA GATAACTTGG ATGTAGGATT ATTATACCTA 
AATTCTTTCT TTCCATGCAT TTATGTCGGT TTTGACATCT TTGTTCTCTT 
AGTTNAAAAN ATATCATATA ATATCTTCTA TTCT

AT1G03620.1

Model type: Protein coding
Short Description: ELMO/CED-12 family protein
Computational Description: ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT3G03610.1); Has 828 Blast hits to 828 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 41; Plants - 178; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G03630.1

Model type: Protein coding
Short Description: protochlorophyllide oxidoreductase C
Curator Summary: Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.
Computational Description: protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Light-dependent protochlorophyllide reductase (InterPro:IPR005979), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 21168 Blast hits to 21148 proteins in 2215 species: Archae - 200; Bacteria - 11840; Metazoa - 1905; Fungi - 1885; Plants - 1089; Viruses - 0; Other Eukaryotes - 4249 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G03630.2

Model type: Protein coding
Short Description: protochlorophyllide oxidoreductase C
Curator Summary: Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.
Computational Description: protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR