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11-1950-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18310115 [Map]; Strand: w
      • AT2G44320.1 - [+] show detail - pre-tRNA
        Distance: -57; Region: promoter
      • AT2G44330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -471; Region: promoter
    Flanking Genome Sequence: 11-1950-1 - 5-prime edge 
    CTCGACCAAA ACGACTTCTT GCTGTAGTTT TGAAACTTAA CTATTAGAAT 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18309999 [Map]; Strand: w
      • AT2G44320.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT2G44330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -587; Region: promoter
    Flanking Genome Sequence: 11-1950-1 - 3-prime edge 
    TGGCCGAGTG GTTAAGGCGT GTGCCTGCTA AGTACATGGG GTTTCCCCGC 
    GAGAGTTCGA ATCTCTCAGG CGACGACTTA TTTTTTTCCA AATTACTTCC 
    ATTATCGTCC AGAAAATTAT CATCTTCCGA TTTCTTCAAT CCCAAGTCTT 
    ATTCATAAAT CTCCCGATTC AGTTTTCCAA AAATTGCATC ACAATTTCTC 
    CAAAGTCTCT CATTTTCCCC AAATTAAAGC ACAAAAATCT CACAAAGTTT 
    TATTTATTCA AACTCTCACT TACATCAAAA CATGAACAAC AACAAAACGA 
    AAACAGTTTC AAAAAGATCC CAAAACCATC CATCACCATT ACGAAGAAGC 
    T

AT2G44320.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: GCT)
Link
InterPro Scan - TAIR

AT2G44330.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G60080.1); Has 9788 Blast hits to 9762 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2640; Fungi - 885; Plants - 4936; Viruses - 11; Other Eukaryotes - 1316 (source: NCBI BLink).
Link
InterPro Scan - TAIR