1. Home
  2. Mutant Lines
  3. 11-1962-1

11-1962-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17285827 [Map]; Strand: w
      • AT2G41460.1 - [+] show detail - apurinic endonuclease-redox protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G41460.2 - [+] show detail - apurinic endonuclease-redox protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 11-1962-1 - 5-prime edge
    TTCAGAGCTC CGCCATAAAT GTCGCCAAGT ACGGTTCTGT CTGAAATCTT 
    TCAATAACTG ATTCGACTTG TTTAGTGGAT NATCCTTGAA AATTTAGGTT
    TANAACCCCA GAAACCAGTT TGGTTTAGAA CGAGTGAATT GTTGCCTCTT
    CTTCTTCTTC TTGAAATTTA GGGCTTATTC TGTGTTGTTG TTACTCCTGA
    ATCGTTTCGG AAAACTTAAA CCTTTTAGTC GTTGATTTTC GGATTTCTTT
    GTTTCATTTA GCTGATGTTT GGAATCTCAA AGCTGTGACC TTTTTTCTCT
    ACTTTTCATG TTTTCCAAAA TTCTCTTGNG TGAAATTTCG TGATTGATGA
    TGGTGATTCT AGGTTTCTGG TGGTGCCTCT TAGGAGTTTG AGAGTTGGTT
    CATCTTTCGT TGGAGTTGGA GTGGGAACAA GAAGTTTCAA CAAGAGGCTT
    ATGTCAAATG CTACAGCTTT CTCTATCAAC AACAGCAAAC GAAAGGAAGT
    CAAGATAGCA GGAGCAGCTA TTGATCAGAA TTGTCATCAG GTGGTTTGTG
    CTAAGTTTGT GATTCATCAG TTCACTTGCA CTAGTGTAGC TAAGGGTTTT
    TGTTTGGTTT GCTTGTTTAA TTGNTGGTTT TGATGTGTNN GGAAGTGATA
    CTGATNGAGA TGAAATGGGA ACTCTTNAGA TGATCNAAAG GAAATTGAGG
    CGATGACTGN C

AT2G41460.1

Model type
Protein coding
Short Description
apurinic endonuclease-redox protein
Curator Summary
apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.
Computational Description
apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41460.2

Model type
Protein coding
Short Description
apurinic endonuclease-redox protein
Curator Summary
apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.
Computational Description
apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1, binding site (InterPro:IPR020847), Exodeoxyribonuclease III xth (InterPro:IPR004808), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR