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11-1991-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5555063 [Map]; Strand: c
      • AT1G16230.1 - [+] show detail - Target SNARE coiled-coil domain protein
        Distance: -739; Region: promoter
      • AT1G16240.1 - [+] show detail - syntaxin of plants 51
        Distance: 0; Region: exon6 (3UTR)
      • AT1G16240.2 - [+] show detail - syntaxin of plants 51
        Distance: 0; Region: exon6 (3UTR)
      • AT1G16240.3 - [+] show detail - syntaxin of plants 51
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 11-1991-1 - 3-prime edge 
    GCAAACTGTG ATAACTGCAC ACATTATATA TTACTTAAAG GGTTTTGGTA 
    ACAGAAGAGA AATGAAAAGC TCAGCCACAA ATGTGGAATG AGGAAATACA 
    TTGCAACCAT TCACATAGAG AGTAGAGGCC AGTGGACCTA CAGAGGAACN 
    TTATAAGTTG TCTGATGTTG GTATTACATA TACTTAACCA ACATCCATAT 
    TACAACAGCA AGACCGACGA TCCCCAGCAC TGACAAGAGC ATTGACATGC 
    AAGAGCAACC ACTTCTCATA TTCTTGTTCA TGACAGCAAG GCTCTTCTGC 
    ACTCTCTGTA ATAAGATAAC AGATCAATGT CTTTAATTAG CCATTAGCTT 
    AAGCATAATG TGGTTCTTGG TTGAGCAAAC CGAAAACAGA TCACCATTAC 
    ATCAGTGTTA CTCCTAATGA AAGTATGGAT CAACTAAAGC T

AT1G16230.1

Model type
Protein coding
Short Description
Target SNARE coiled-coil domain protein
Computational Description
Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 184 Blast hits to 184 proteins in 71 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 66; Plants - 93; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16240.1

Model type
Protein coding
Short Description
syntaxin of plants 51
Curator Summary
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational Description
syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 837 Blast hits to 837 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 265; Fungi - 234; Plants - 241; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16240.2

Model type
Protein coding
Short Description
syntaxin of plants 51
Curator Summary
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational Description
syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16240.3

Model type
Protein coding
Short Description
syntaxin of plants 51
Curator Summary
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational Description
syntaxin of plants 51 (SYP51); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 550 Blast hits to 550 proteins in 163 species: Archae - 0; Bacteria - 4; Metazoa - 169; Fungi - 163; Plants - 161; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR