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11-2007-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2903587 [Map]; Strand: c
      • AT3G09440.2 - [+] show detail - Heat shock protein 70 (Hsp 70) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G09440.1 - [+] show detail - Heat shock protein 70 (Hsp 70) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-2007-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG AGGATAAGAT GAAAGAGCTC GAGAGTATTT 
    GCAACCCGAT CATAGCAAAG ATGTACCAAG GCAGGTGAAG CTGGTGGTCC 
    AGCTGCAGGA GGAATGGACG AGGATGTTCC TCCTTCTGCC GGAGGTGCAG 
    GTCCCAAGAT TGAGGAAGTC GACTAATAAC TTTCTCTCTT ACTCTCAGTC 
    TTTGTGTTTG TATTTCAACA TTTTCCTGTT TTGTCCCCTA GTTTTTGTTT 
    TTTTTTTCTT TCTTGNNTNG ACNCTATTTN GGGGGCTCGC TTGTTTCAAT 
    NACCNCCTTA TTTTTTTTAA TNTNTANCAG NAATGTTTNN ATTAATTNTG 
    CANGGTTTTT NTTNTTTTAC CCTTTTTANN TTAAAAAAAA NNCTTTNTNT 
    CAAAAACAAT NAAANNCTGT ANCCCCNTNA NTNAAGTNTC CCTTTGNAAC 
    NNTGGNNAGT NGNTTTGGNA AAANANACAA ACCCGGGCCG NNAACNACCC 
    NTNCCNTNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2903589 [Map]; Strand: c
      • AT3G09440.2 - [+] show detail - Heat shock protein 70 (Hsp 70) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G09440.1 - [+] show detail - Heat shock protein 70 (Hsp 70) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-2007-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCAAATTCA TCACACTCTG CTAGCTGATT CGCTTCTAGC CATTCAATGG 
    CTGCTTCAAT TGAGTCTTCA ATCTTCTTCT TGTCATCTCC AGCAAGCT

AT3G09440.1

Model type
Protein coding
Short Description
Heat shock protein 70 (Hsp 70) family protein
Computational Description
Heat shock protein 70 (Hsp 70) family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to karrikin, response to heat; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34172 Blast hits to 33801 proteins in 4833 species: Archae - 161; Bacteria - 16465; Metazoa - 3857; Fungi - 1750; Plants - 1254; Viruses - 309; Other Eukaryotes - 10376 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09440.2

Model type
Protein coding
Short Description
Heat shock protein 70 (Hsp 70) family protein
Computational Description
Heat shock protein 70 (Hsp 70) family protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to karrikin, response to heat; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1).
Link
InterPro Scan - TAIR