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11-2025-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18204360 [Map]; Strand: w
      • AT4G39060.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat su...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-2025-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAC GTTATAAATG ATACTGAATT TTGTACTTAT
    GGTGGAAAGC T
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18204347 [Map]; Strand: w
      • AT4G39060.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat su...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 11-2025-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATC 
    AAGTCCAGTC AAACCGTTGA CCAATCTCCA CTCTTCTGAC GACTCTTCTG
    ACGACGTTGT TTCCATCCAC CAACATCTTT TATCCGCATA AGTGTATTCT
    ACATTCTCTA TGACACAATA TTTCTCCACC AAGCT

AT4G39060.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19250.1); Has 375 Blast hits to 365 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR