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11-2028-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19131674 [Map]; Strand: w
      • AT2G46580.1 - [+] show detail - Pyridoxamine 5'-phosphate oxidase family protein
        Distance: -1079; Region: intergenic
      • AT2G46590.2 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -1366; Region: intergenic
    Flanking Genome Sequence: 11-2028-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATACTTA 
    GACACAAAAG CATCTTATTC AAAACATAAT GTGAAATATG TATGTATTAG 
    ACGGAAAATT CACGAGAACC ATATAGTAAA ACCGTGTGAA CCTTCTAGGT 
    ACATGATTCA ACATGAGTTA TAAAAGCAAA ATTAATCGTC ATTTAAAAAA 
    CCTGATATAC TACNTTTTTT GTAATGAATG AATTGACTCC TTTATATCAA 
    TTCATAGATT CATTTGGCTA CAATTATACA ACGAATAATA AAATAAAAAG 
    AAATCCAAGT GAAAAAGTTT ATAAATAATA AAATACAGTA CTAAAGTAAT 
    AGATTGCATC TATAAGGAAT TTTCGAGGAG GAGAATTTTG AAAAAGAGAA 
    GGAGGGAGGA GAAGAATTTA GAAAAGAGAA GACCGACAGG AAGCGACAAA 
    AAGGAGGTGG AGCTGGGTCC CACTATTCGT GGCGTGATTG TGATTTTATT 
    TTATTTTTCT TTCTGGATGT TGACATCTGT CTTCTCTTAC CCAACACCTT 
    CTCCCACCCA ATAAAAAATC TCTTTCCCCA TCTTATCGTG TCGTTTTACT 
    GTTTCAGCTT TACCTTGGCT GCCGTTTTGC TTTAAAGACT TGTCAATTGC 
    CACATGTCCT TCTAGTTGTT TGGTTTAGTC GGTTCGCACA TTTTTTCCCA 
    TTTAGATATC AAAGCT

AT2G46580.1

Model type
Protein coding
Short Description
Pyridoxamine 5'-phosphate oxidase family protein
Computational Description
Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding, pyridoxamine-phosphate oxidase activity; INVOLVED IN: oxidation reduction, pyridoxine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxamine 5'-phosphate oxidase (InterPro:IPR000659), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); Has 1290 Blast hits to 1290 proteins in 309 species: Archae - 0; Bacteria - 510; Metazoa - 56; Fungi - 60; Plants - 40; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46590.2

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
encodes a protein containing Dof zinc finger motifs. expression is limited to vascular system of the mother plant. recessive mutation is inherited as maternal-effect and expression is not detected in the embryo. mutants are defective in seed germination. mutants are more dependent on light and cold treatment and less sensitive to gibberellin during seed germination.
Computational Description
DOF AFFECTING GERMINATION 2 (DAG2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G61850.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR