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11-2038-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8473880 [Map]; Strand: w
      • AT2G19580.1 - [+] show detail - tetraspanin2
        Distance: 0; Region: intron2 (CDS)
      • AT2G19582.1 - [+] show detail - other RNA
        Distance: -566; Region: promoter
    Flanking Genome Sequence: 11-2038-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCNT GACTNCNNGA GCNANNAGNT GNACNACCCA 
    ATGGCNGATA CNTGNNATAN TGAAANAACA NGTNGGGTCA GTTATTCTCC 
    GANACGTAGT AATCATAGAG ATGAANTNGG TCNNANAAAT ANTNGGCTCA 
    GTGNTNGACA ATAGACCGAG GAACTNCACG TGAGAAGTAT NGAATNGCCT 
    GCNCNGNNCN GANGANAANA GNGNGCACTA TAAGCAATTC TCTTTTGGAC 
    ATCTTCACAA AAGCGTAAAG AGAAATTTTT TAACTTTTTG ATTTAAAACC 
    ACTTACTTTA CTTTTTGAAA GAAAAAATAA CCTATCTTTC TATGGCAAGA 
    ACAAACCGTA GGTCTCACAT AATCTAGAGA TTTTACAAAA CATTCTCTTT 
    ACTTCGTATC TTATCTCCAT TAATCATCTA ATAATATCTA ATTAAACCCA 
    CAATGATTCG TTGGCATAGT TGCATAACCG ATATTTAGTC TANATTTACC 
    TCTAAACCAA ACCTAAACCG GAAACTAGAA ATTTCGGGGT TCTTTTTATA 
    AAAGAGAATA AAAGAAGAAA GAACATGCCT GGAGAGGAGT GATCTTAGAG 
    GAGGAGAAGA ACTGATCGGC GGTGATGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8473881 [Map]; Strand: w
      • AT2G19580.1 - [+] show detail - tetraspanin2
        Distance: 0; Region: intron2 (CDS)
      • AT2G19582.1 - [+] show detail - other RNA
        Distance: -565; Region: promoter
    Flanking Genome Sequence: 11-2038-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACCATTATTG AACACATATT TATTCCTAGT AGACTGGTGT AGAAGTTGCT 
    GGAGACCAAG TCCACAAGAT TATATAGTAA GATAGTCAGA TTTCAAAATT 
    ATACACTATC ATAAGGACCC ACCCATGCAC CCACAATATG GTACATGATA 
    AAATATGTTT TATCTGTGTA TTAATTATAT TTTTCCTTTT CCTTTGTCAC 
    TATCTCACTC ATGAAATTCA ATGATCCCAT TCACTTTAGA TAGTGTTTTT 
    CGTGATCACA ACTCAAACAT GACAAAATTT CCAACTTTTT CTATTTAATT 
    TTATTAATTA AAATCACTCT TAAAATTCAT TGTCATGTCT TTTAAGCT

AT2G19580.1

Model type
Protein coding
Short Description
tetraspanin2
Curator Summary
Member of TETRASPANIN family
Computational Description
tetraspanin2 (TET2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT5G46700.1); Has 515 Blast hits to 513 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G19582.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G19580
Link
InterPro Scan - TAIR